Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20159
(589 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 176 2e-45
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 98 1e-21
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 96 3e-21
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 93 4e-20
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 62 8e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 59 5e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 49 4e-07
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 39 6e-04
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 30 0.29
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 28 0.88
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 27 1.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.7
SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr... 26 3.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 3.5
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 26 4.7
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 176 bits (429), Expect = 2e-45
Identities = 79/90 (87%), Positives = 82/90 (91%)
Frame = +2
Query: 239 GTEGLYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLIE 418
G + YVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LL E
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTE 107
Query: 419 APLNPKANREKMTQIMFETFNTPAMYVAIQ 508
APLNPK+NREKMTQI+FETFN PA YVAIQ
Sbjct: 108 APLNPKSNREKMTQIIFETFNAPAFYVAIQ 137
Score = 106 bits (254), Expect = 3e-24
Identities = 46/51 (90%), Positives = 50/51 (98%)
Frame = +3
Query: 102 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 254
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDS
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDS 52
Score = 34.3 bits (75), Expect = 0.013
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 543 GIVLDSGDGVSHTVP 587
GIVLDSGDGV+HTVP
Sbjct: 150 GIVLDSGDGVTHTVP 164
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 511 VLSLYASGRTT 543
VLSLYASGRTT
Sbjct: 139 VLSLYASGRTT 149
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 97.9 bits (233), Expect = 1e-21
Identities = 40/95 (42%), Positives = 66/95 (69%)
Frame = +2
Query: 224 RDGRYGTEGLYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 403
+ G + + VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102
Query: 404 VLLIEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 508
+LL E P+NP ANREKM + MFE + +YVAIQ
Sbjct: 103 ILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQ 137
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +3
Query: 108 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 212
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
Score = 30.3 bits (65), Expect = 0.22
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +3
Query: 543 GIVLDSGDGVSHTVP 587
G+V+DSGDGV+H VP
Sbjct: 150 GVVVDSGDGVTHIVP 164
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 96.3 bits (229), Expect = 3e-21
Identities = 41/88 (46%), Positives = 61/88 (69%), Gaps = 1/88 (1%)
Frame = +2
Query: 251 LYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLIEAPL 427
++VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LL E PL
Sbjct: 56 MFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPL 115
Query: 428 NPKANREKMTQIMFETFNTPAMYVAIQP 511
N+EK+ + +ET N PA+ ++QP
Sbjct: 116 ANIRNKEKIAEYFYETLNVPALSFSLQP 143
Score = 58.8 bits (136), Expect = 5e-10
Identities = 25/44 (56%), Positives = 32/44 (72%)
Frame = +3
Query: 120 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 251
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKD 55
Score = 27.9 bits (59), Expect = 1.2
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +3
Query: 543 GIVLDSGDGVSHTVP 587
GIVL+ GDG++H+VP
Sbjct: 155 GIVLECGDGLTHSVP 169
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 92.7 bits (220), Expect = 4e-20
Identities = 39/86 (45%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Frame = +2
Query: 254 YVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLIEAPLN 430
++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LL E PLN
Sbjct: 75 FIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLN 134
Query: 431 PKANREKMTQIMFETFNTPAMYVAIQ 508
P NRE +IMFE+FN +Y+A+Q
Sbjct: 135 PPENRENTAEIMFESFNCAGLYIAVQ 160
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +3
Query: 120 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 203
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
Score = 30.7 bits (66), Expect = 0.16
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3
Query: 531 RSYHGIVLDSGDGVSHTVP 587
RS G V+DSGDGV+H +P
Sbjct: 177 RSLTGTVVDSGDGVTHIIP 195
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 61.7 bits (143), Expect = 8e-11
Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Frame = +2
Query: 227 DGR--YGTEGLYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 400
DGR +G E +Y +S G + +K I +G V NWD +W + +L+ P EH
Sbjct: 46 DGRRLFGEEYIY-----KSNPG-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEH 99
Query: 401 PVLLIEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 508
P+L+ E NP NR K + MFE+ PA Y+A Q
Sbjct: 100 PILITEPFDNPPENRVKTLETMFESLRCPATYLAKQ 135
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 105 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 206
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 58.8 bits (136), Expect = 5e-10
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Frame = +2
Query: 224 RDGRYGTEGLYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 400
RD + VG++ + G ++ + P E +++NWD ME++ +TF +L + EH
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116
Query: 401 PVLLIEAPLNPKANREKMTQIMFETFNTPAMYVAI 505
P+ + E NP R MT+++FE +N P++ I
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSVAYGI 151
Score = 35.9 bits (79), Expect = 0.004
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 120 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 215
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 49.2 bits (112), Expect = 4e-07
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Frame = +2
Query: 254 YVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLIEAPL 427
YV DE Q I + +K +GI+ +W+ W +L+V P E+ +++ E
Sbjct: 52 YVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSW 111
Query: 428 NPKANREKMTQIMFETFNTPAMYVAIQ 508
NP++ R+++ + FE + PA Y+ Q
Sbjct: 112 NPQSVRQQIMEAAFEQLHVPAFYLTKQ 138
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 105 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 206
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 38.7 bits (86), Expect = 6e-04
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +2
Query: 305 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLIEAPLNPKANREKMTQIMFE 472
PI+ G V +W+ ++ W H Y+ L P + +PV L+ +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 473 TFNTPAMYVAIQP 511
P +A +P
Sbjct: 172 ECQVPGFTIAYEP 184
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 29.9 bits (64), Expect = 0.29
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -1
Query: 337 IPVSDDSVFDGVFEGQDTSFALCLISYIESFCPIPTITP*WRGLPTIEGNTARGASSPAK 158
+P + +V +TSFAL S S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 157 PALHIP 140
P L+ P
Sbjct: 123 PQLNSP 128
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 28.3 bits (60), Expect = 0.88
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 573 RHRRRSPARYRGTTGRVQREHGWMATYMAGVL 478
R +R +P + T R E+ W A Y AGVL
Sbjct: 192 RSKRLTPLLIKEVTRRCHLENVWQAVYTAGVL 223
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +2
Query: 389 PEEHPVLLIE-APLNPKANREKMTQIMFETFN 481
PEE ++E APL+ + +KM +++FET+N
Sbjct: 174 PEEDFFRVLETAPLHAEEVSKKMKELLFETYN 205
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -1
Query: 235 PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 101
PT+ P P N S P PL+TTN TS+S
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 179
Score = 26.2 bits (55), Expect = 3.5
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +2
Query: 380 RVAPEEHPVLLIEAPLNPKANREKMTQIMFETFNTPAMYVAIQPCSRCTRPVVPRYRAGL 559
++ EHP+ L + + + E + + +++ T + I CS CT + R L
Sbjct: 65 KINDPEHPLTLAQLSVVKLEDIEVVDNVEGDSYITVHITPTIPHCSMCTL-IGLCIRVRL 123
Query: 560 RRRCLPHRAH 589
RCLP R H
Sbjct: 124 -ERCLPPRFH 132
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 241 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 149
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.8 bits (54), Expect = 4.7
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +2
Query: 368 YNELRVAPEEHPVLLIEAPLNPKANREKMTQIMFETFNTPAMYVAIQPCSRCTRPVVPRY 547
Y+EL +A +E P L P PK + + N A + +P S+ TRP +P Y
Sbjct: 23 YSELPIAYQEIP--LQSLPPYPKVASKLKGVVAGGKENNIASFQ--KPSSKATRPYIPSY 78
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,576
Number of Sequences: 5004
Number of extensions: 54452
Number of successful extensions: 180
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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