Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20159
         (589 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     26   0.24 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   6.8  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   6.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   9.0  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   9.0  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    21   9.0  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -3

Query: 296 GSGYLFCSVPHLLHRVLLSHTDHHALMAGPSHDRGEHGARSIISC 162
           GS Y+   VP    RVLL+ TD   +    S D  E+G     +C
Sbjct: 329 GSNYMQTRVPAWCDRVLLNPTDKMLVQDISSPDAVEYGIIGPTTC 373


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 474 HSTRPPCTSPSNRALA 521
           H T PP  SPS++A A
Sbjct: 674 HLTSPPARSPSSQAQA 689


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 476 FNTPAMYVAIQPC 514
           FNT  ++V ++PC
Sbjct: 223 FNTTTIFVPVKPC 235


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 141 GMCKAGFAGD 170
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 539 PRYRAGLRRRC 571
           PRYR  L++RC
Sbjct: 341 PRYRQELQKRC 351


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 200 DRGEHGARSIISCETGLA 147
           D GEH   ++   E GLA
Sbjct: 130 DPGEHNGDTVTDVEAGLA 147


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 539 PRYRAGLRRRC 571
           PRYR  L++RC
Sbjct: 341 PRYRQELQKRC 351


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 200 DRGEHGARSIISCETGLA 147
           D GEH   ++   E GLA
Sbjct: 125 DPGEHNGDTVTDVEAGLA 142


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +2

Query: 206 KAPPSGRDGRYGTEGLYVGDEAQSKRGILTLKYPIEHGIVTNWDD 340
           K  P G  G  G + +    E   KRG++  +  ++    T +DD
Sbjct: 180 KRAPMGFYGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFDD 224


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +2

Query: 206 KAPPSGRDGRYGTEGLYVGDEAQSKRGILTLKYPIEHGIVTNWDD 340
           K  P G  G  G + +    E   KRG++  +  ++    T +DD
Sbjct: 180 KRAPMGFYGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFDD 224


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,090
Number of Sequences: 438
Number of extensions: 4216
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)