Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20156
(711 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C4.13 |bet1||SNARE Bet1|Schizosaccharomyces pombe|chr 1|||... 31 0.21
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 31 0.21
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch... 30 0.28
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 30 0.38
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 28 1.1
SPCC1739.05 |set5||histone lysine methyltransferase Set5 |Schizo... 28 1.1
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.0
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 27 2.0
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 27 2.6
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 27 2.6
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.6
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 27 2.6
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ... 26 4.6
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 26 4.6
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 6.1
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 26 6.1
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 25 8.1
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 8.1
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 8.1
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo... 25 8.1
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 25 8.1
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 8.1
>SPAC23C4.13 |bet1||SNARE Bet1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 117
Score = 30.7 bits (66), Expect = 0.21
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +2
Query: 470 GPAFGRTKTSTPKLLPPYEVKISSRSDGFVIDEDLTDDSLQYLTDDVKELIKIARNPGDD 649
G FGR K +LP YE + D E+ D+ + LT VK L ++ N G +
Sbjct: 2 GSRFGRRKERNGDMLPLYESQSPQHLDSL---ENENDERISKLTGKVKSLKELTMNIGTE 58
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 30.7 bits (66), Expect = 0.21
Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 1/135 (0%)
Frame = +1
Query: 127 TSVHTAKQQVQLSDSYLPVAMQIIAHLTDQMAFEVD-DVTPSSIPQRQPQSHQNSQHVPT 303
+SV T K + LSD + Q A +T + EV + S + Q+ H+PT
Sbjct: 922 SSVMTEKSK--LSDQVNDLTEQ--AKITQRKLSEVQIALADSKMNQQLSGKDSTDVHLPT 977
Query: 304 NQDFTRRHHHQASQTDSTITGNGLSCYHSSKRLSTPSSGRKSPRQKLHCFLSIKNRSSLW 483
DF+ S + + N S HSSK PS G + + L +
Sbjct: 978 --DFSASSSPLRSYFNEEDSFNNASAAHSSKESDIPSGGVFTKYRNHFGNLMTSEETKAP 1035
Query: 484 SNQDLNTKTSAAIRS 528
N DL+ + S I S
Sbjct: 1036 DNNDLHKRLSDVINS 1050
>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 30.3 bits (65), Expect = 0.28
Identities = 25/109 (22%), Positives = 45/109 (41%)
Frame = +1
Query: 73 FKVINMMVPLIFLIINAATSVHTAKQQVQLSDSYLPVAMQIIAHLTDQMAFEVDDVTPSS 252
+ V N+ P I++A T + + +++P M +LT+Q+AF T SS
Sbjct: 78 YNVFNLGCPPPPYIVSANTYMAPKGMNAMNAAAFVP--MMPAVNLTNQVAFSAPQTTASS 135
Query: 253 IPQRQPQSHQNSQHVPTNQDFTRRHHHQASQTDSTITGNGLSCYHSSKR 399
N+Q Q + + HQ ++T S + +H +R
Sbjct: 136 ----------NTQLTQQQQSLPQTNEHQRARTHSNANNHFTKTHHQGQR 174
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 29.9 bits (64), Expect = 0.38
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = -1
Query: 690 SGPDLNPSQTSTTLSSPGLRAILISSFTSSVKYCKLSSVRSSSITKPSDLLEILTSYGGR 511
S + S +S++ SS + SS +SS SS SSS ++PS +T+
Sbjct: 188 SSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSS 247
Query: 510 SFGVEVLVRPKA 475
+F V V P +
Sbjct: 248 TFISTVTVTPSS 259
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 536 SSRSDGFVIDEDLTDDSLQYLTDDVKELIKIARNPG 643
SS+S F I EDL D L+Y +D + +R PG
Sbjct: 540 SSQSSHFRIIEDLPDSKLKYSLEDQATYDQSSRYPG 575
>SPCC1739.05 |set5||histone lysine methyltransferase Set5
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 319
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/77 (25%), Positives = 33/77 (42%)
Frame = -1
Query: 708 ALADMGSGPDLNPSQTSTTLSSPGLRAILISSFTSSVKYCKLSSVRSSSITKPSDLLEIL 529
A+ D+ +G ++ + S + IL+ F YC + SV I K SDL
Sbjct: 126 AVRDIEAGEEILTTYIDLHKSHTERQKILLEHFGFKC-YCSVCSVEERKIRKISDLRRKQ 184
Query: 528 TSYGGRSFGVEVLVRPK 478
+Y R+ +V P+
Sbjct: 185 LAYYDRTMAKMCIVNPR 201
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 27.5 bits (58), Expect = 2.0
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = -1
Query: 702 ADMGSGPDLNPSQTSTTLSSPGLRAI--LISSFTSSVKYCKLSSVRSSSITKPSDL 541
A S PS +STT SS + + SS TSS+ SSV SSS + +
Sbjct: 139 ASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSI 194
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 27.5 bits (58), Expect = 2.0
Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 3/147 (2%)
Frame = +1
Query: 118 NAATSVHTAKQQVQLSDSYLPVAMQIIAHLTDQMAFEVDDVTPSSIPQRQPQSHQNSQHV 297
N+ S + Q SD Q + H TD MA + +P PQ+ P +++
Sbjct: 45 NSFLSRKNSSQIKSPSDYKSSAHEQRVNHTTDSMAHVPGNNSPLQTPQKSPPRQKHTAPA 104
Query: 298 PTNQDFTRRHHHQASQTDSTITGNGLSCYHSSKRLSTPSSGRKSPRQKLHCFLS---IKN 468
RHH + + H S ++P+S +SP + F++ +
Sbjct: 105 TPIPVSASRHHKPHHSGLKNLLEKAMHPGHKS-NANSPTS--ESPSKGFGSFINNHILHK 161
Query: 469 RSSLWSNQDLNTKTSAAIRS*NLEQVR 549
+S + +N K+S +S + + ++
Sbjct: 162 NTSSHPSSPVNGKSSDIHKSQSYQHLK 188
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 27.1 bits (57), Expect = 2.6
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = -1
Query: 675 NPSQTSTTLS--SPGLRAILISSFTSSVKYCKLSSVRSSSITKPSDLLEILTSYGGRSFG 502
N S +S ++ +P R ISS TSS+ YC SS+ T+ + + + SYG + G
Sbjct: 225 NASTSSAPINPRAPQTRRESISS-TSSIHYCSSSSLSYLHDTERALVGSLTDSYGFKKSG 283
Query: 501 VEVLVRPKAGPVLDG 457
L++ ++DG
Sbjct: 284 ---LIKKTISLMIDG 295
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 435 TEASLLSIHQEQVQPLVEPRPQH 503
TE +L HQE QPL++ QH
Sbjct: 530 TEPQILEYHQEWPQPLIQSIQQH 552
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1379
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +1
Query: 253 IPQRQPQSHQNSQHVPTNQDFTRRHHHQASQTDSTITGNGLSCYHSSKRLSTPSS 417
IP + + +S H+P++ F+ HH + + + IT S + S SS
Sbjct: 932 IPSNKTEWSSSSLHIPSHNSFSDIHHRKIAAHAAAITAASEKLTPSIEETSYSSS 986
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 235 DVTPSSIPQRQPQSHQNSQHVPTNQDFTRRHHHQASQTDSTITGNG 372
D + S++ + QNS H +Q T S+T + ++GNG
Sbjct: 364 DFSDSAVTNQSHSQSQNSLHPLISQSETHSIFSALSETPTPVSGNG 409
>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 448
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +3
Query: 372 FILLPLEQATQYTVIRPQEPKTEASLLSIHQEQV 473
FI+L L+ A ++ +I P+E K +++L + + +
Sbjct: 182 FIILLLDIALRFLMIEPREMKNDSTLQDVERTSI 215
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +1
Query: 322 RHHHQASQTDSTITGNGLSCYHSSKRLST--PSSGRKS 429
RHHH +TD + +G+ S++R S SGR S
Sbjct: 480 RHHHHHHKTDLIESDSGIEASESNRRKSDIFSFSGRNS 517
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 6.1
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = -1
Query: 708 ALADMGSGPDLNPSQT-STTLSSPGLRAILISSFTSS---VKYCKLSSVRSSSITKPSDL 541
A + + S L S T STT +SP ++ SS TSS SS+ SSSIT S
Sbjct: 81 ASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLA 140
Query: 540 LEILTS 523
+TS
Sbjct: 141 SSSITS 146
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 328 HHQASQTDSTITGNGLSCYHSSKRLSTPSSGRKSPRQKLHCFLS 459
+H SQTD G+ +S ++KRL + S+ R+K + FLS
Sbjct: 416 NHSNSQTDLR-NGDAVSTVANNKRLRSLSTYLTDSRRKANRFLS 458
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/61 (22%), Positives = 26/61 (42%)
Frame = +1
Query: 130 SVHTAKQQVQLSDSYLPVAMQIIAHLTDQMAFEVDDVTPSSIPQRQPQSHQNSQHVPTNQ 309
S+H ++S+ I H D ++ D+V P +PQ+ H S +P+
Sbjct: 431 SLHGLDFLENANESFPEQMYPFIKHNKDYISNHPDEVPPDGLPQK--GKHDTSSQMPSEN 488
Query: 310 D 312
+
Sbjct: 489 E 489
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = +1
Query: 244 PSSIPQRQPQSHQNSQHVPTNQDFTRRHHHQASQTDSTITGNGLSCYHSSKRLSTPSSGR 423
P +QPQ Q Q Q R+ H Q STI Y+S ++ P +G+
Sbjct: 178 PQQQQHQQPQQPQPPQQPLQQQQQQRQLHSGIQQPVSTIVSQN-GTYYSIPAVNHPMAGQ 236
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 8.1
Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 9/88 (10%)
Frame = +3
Query: 102 NIPDN*RSNFGAHSQTASSAFRLLPPGGHADHSSPHGPDGLRSGRCNSIIHSXXXXXXXX 281
N+ +N R N G H S +LPP A H+ + P S N+ +
Sbjct: 926 NMDNNDRDNEGIHDILQSDMEPVLPPHNSAYHA--NAPVSSHSEGLNNRLPISPLPPQLH 983
Query: 282 XXXXXXHKPGF---------YAPSSPPS 338
H+ GF YAPS PP+
Sbjct: 984 KTGTPSHQHGFDTAETTAKQYAPSIPPN 1011
>SPAC22F3.12c |rgs1||regulator of G-protein signaling
Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 591 CKLSSVRSSSITKPSDLLEILTSYGGRSFGVEVL 490
C LSS +++ PSDL E +T++ + VE L
Sbjct: 409 CFLSSNAPNAVNLPSDLYEKITNHMALAMEVEPL 442
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 25.4 bits (53), Expect = 8.1
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 9/74 (12%)
Frame = +2
Query: 455 YPSRTGPAFG-RTKTS----TP--KLLPPYEVKISSRSDGFVIDEDLTDDSLQ--YLTDD 607
Y +R+G FG T T+ TP K+LPP + K + S G +++ED DS + YL+ D
Sbjct: 182 YSTRSGFGFGFSTGTNESEITPNIKVLPPKKKK--NASWGKMLNEDPEYDSAEEDYLSTD 239
Query: 608 VKELIKIARNPGDD 649
+E + + N ++
Sbjct: 240 SEEFSEDSDNSSEE 253
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 8.1
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Frame = +1
Query: 247 SSIPQRQPQSHQNSQHVPTNQDFTRRHHHQASQTDSTITGNGLSCYHSSKRLSTPSSGRK 426
SS P S + + + ++S + S+ + + S SSK ++PSS +
Sbjct: 158 SSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKS 217
Query: 427 SPRQKLHCFLSIKNRSSLWSNQDL--NTKTSA 516
S + F++ +S S+ + N KT++
Sbjct: 218 SSKFSSSSFITSTTPASSSSSGAIVSNAKTAS 249
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,063,337
Number of Sequences: 5004
Number of extensions: 65998
Number of successful extensions: 266
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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