Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20156
(711 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0998 - 23214548-23214567,23215424-23216120 34 0.097
06_03_0333 - 19658344-19658363,19659286-19659916 34 0.097
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998... 31 1.2
11_01_0389 - 2937242-2939476,2939556-2939666,2941254-2941450,294... 30 1.6
01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267 30 1.6
05_05_0282 + 23813500-23813584,23813676-23813734,23813940-23814368 29 3.6
02_05_1260 + 35299795-35299905,35300065-35300112,35301181-35302356 29 3.6
01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146 29 3.6
11_04_0445 + 17818190-17818874,17819730-17819749 29 4.8
05_04_0284 - 19813179-19813340,19813464-19813748,19813850-198141... 29 4.8
04_04_0681 - 27225526-27225802,27227163-27227524 29 4.8
03_06_0753 + 36015026-36015256,36015780-36015885,36016132-360161... 29 4.8
06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258 28 6.4
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 28 6.4
01_01_0987 + 7803281-7803910,7803989-7804510 28 6.4
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 28 8.4
10_08_0505 + 18384392-18384454,18384593-18384679,18385878-183864... 28 8.4
10_08_0490 + 18279370-18279732,18280776-18280834,18281642-18282728 28 8.4
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 28 8.4
06_03_0871 - 25562767-25563509,25563889-25565776 28 8.4
04_04_1598 + 34698260-34698316,34698438-34699544 28 8.4
01_06_0803 - 32100502-32101425 28 8.4
>07_03_0998 - 23214548-23214567,23215424-23216120
Length = 238
Score = 34.3 bits (75), Expect = 0.097
Identities = 26/98 (26%), Positives = 43/98 (43%)
Frame = +1
Query: 193 IIAHLTDQMAFEVDDVTPSSIPQRQPQSHQNSQHVPTNQDFTRRHHHQASQTDSTITGNG 372
I+ + D M E++D + + Q Q Q+ Q + H + RR+ ++ Q D
Sbjct: 25 ILEEINDPMEAEIEDEIEAQL-QAQMQAQQ-AGHSNRRGGYKRRYINRDHQDDHNRL--- 79
Query: 373 LSCYHSSKRLSTPSSGRKSPRQKLHCFLSIKNRSSLWS 486
+ Y+S L T R+ R + H FL I +WS
Sbjct: 80 FAKYYSDNPLYTDDQFRRRFRMRKHLFLHIVEALGIWS 117
>06_03_0333 - 19658344-19658363,19659286-19659916
Length = 216
Score = 34.3 bits (75), Expect = 0.097
Identities = 26/98 (26%), Positives = 42/98 (42%)
Frame = +1
Query: 193 IIAHLTDQMAFEVDDVTPSSIPQRQPQSHQNSQHVPTNQDFTRRHHHQASQTDSTITGNG 372
I+ + D M E++D + + Q Q Q+ Q H + RR+ ++ Q D
Sbjct: 25 ILEEINDPMEAEIEDEIEAQL-QAQMQAQQTG-HSNRRGGYKRRYINRDYQDDHNRL--- 79
Query: 373 LSCYHSSKRLSTPSSGRKSPRQKLHCFLSIKNRSSLWS 486
+ Y+S L T R+ R + H FL I +WS
Sbjct: 80 FAKYYSDNPLYTDDQFRRRFRMRKHLFLHIVEALGIWS 117
>07_03_0965 - 22996575-22999112,22999202-22999636,22999717-22999801,
22999888-22999957,23000050-23000293,23000396-23000482,
23000655-23000706,23000830-23001226,23001324-23001648,
23001748-23001914,23002007-23002547
Length = 1646
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +1
Query: 241 TPSSIPQRQPQSHQNSQH---VPTNQDFTRRHHHQASQTDSTITGNGLSCYHSSKRLSTP 411
+PSSIPQ+Q Q Q QH + Q +HHH S+ S N Y S RL+ P
Sbjct: 1233 SPSSIPQQQ-QQQQQQQHFLQLHKQQQQLIQHHHMNSRPRSAAPSN-TGGY--SDRLNMP 1288
Query: 412 S 414
S
Sbjct: 1289 S 1289
>11_01_0389 -
2937242-2939476,2939556-2939666,2941254-2941450,
2941543-2941633
Length = 877
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 366 QRFILLPLEQATQYTVI--RPQEPKTEASLLSIHQEQVQPLVEPRPQHQN 509
++ +LLP Q Q + RP P+T LL ++ P+V P P QN
Sbjct: 104 EKVMLLPFSQDVQKFICIKRPTLPETSFELLREVYPEITPVVLPSPVEQN 153
>01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267
Length = 769
Score = 30.3 bits (65), Expect = 1.6
Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 2/108 (1%)
Frame = +1
Query: 127 TSVHTAKQQVQLSDSYLPVAMQIIAHLTD--QMAFEVDDVTPSSIPQRQPQSHQNSQHVP 300
T+ A + DS + Q+ ++L D + E D+ + + +H+ QH P
Sbjct: 345 TATKEASKSTDHEDSLELTSTQLSSNLFDLNEALPESTDLNYPYVSNPEDPNHEPRQHEP 404
Query: 301 TNQDFTRRHHHQASQTDSTITGNGLSCYHSSKRLSTPSSGRKSPRQKL 444
+ D + +Q D ++ +GL C S P SG + R +
Sbjct: 405 LDSDVQVIDEGRQNQQDLSLDSHGLQCQ------SVPESGLERARSSI 446
>05_05_0282 + 23813500-23813584,23813676-23813734,23813940-23814368
Length = 190
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +1
Query: 40 LKCRELYRVFVFKVINMMVPLIFLIINAATSVHTAKQQVQLSDSYLPVAMQIIAHLTDQM 219
++ R+L V + +++PL+ + + S+H + QQ LS + + A TD
Sbjct: 1 MRSRDLVAVLAMSSL-LLLPLLVSSVPMSGSLHLSSQQQHLSSPNISADDMVAATTTD-- 57
Query: 220 AFEVDDV-TPSSIPQRQPQ 273
EV+D P + P+ P+
Sbjct: 58 -VEVNDYPAPGANPRHNPK 75
>02_05_1260 + 35299795-35299905,35300065-35300112,35301181-35302356
Length = 444
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +3
Query: 138 HSQTASSAFRLLPPGGHADHSSPHGPDGLRSGRC 239
+ ++A+++FRL+P G + DH P + R+G C
Sbjct: 342 NGESAAASFRLVPTG-NGDHIHPRESNDTRAGLC 374
>01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146
Length = 855
Score = 29.1 bits (62), Expect = 3.6
Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 2/108 (1%)
Frame = +1
Query: 127 TSVHTAKQQVQLSDSYLPVAMQIIAHLTD--QMAFEVDDVTPSSIPQRQPQSHQNSQHVP 300
T+ A + DS + Q+ ++L D + E D+ + + +H+ QH P
Sbjct: 345 TATKEASKSTDHEDSLELTSTQLSSNLFDLNEALPESTDLNYPYVSNPEEPNHEPRQHEP 404
Query: 301 TNQDFTRRHHHQASQTDSTITGNGLSCYHSSKRLSTPSSGRKSPRQKL 444
+ D +Q D ++ +GL C S P SG + R +
Sbjct: 405 LDSDVQVIDEGGQNQQDLSLDSHGLQCQ------SVPESGLERARSSI 446
>11_04_0445 + 17818190-17818874,17819730-17819749
Length = 234
Score = 28.7 bits (61), Expect = 4.8
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Frame = +1
Query: 202 HLTDQMAFEVDDVTPSSIP-QRQPQSH-QNSQHVPTNQDFTRRHHHQASQTDSTITGNGL 375
+L + + E++D + I Q Q Q Q + H + RR+ ++ Q D
Sbjct: 20 YLEELILEEINDPMEAEIEAQLQAQMQAQQAGHSNRRGGYKRRYINRDHQDDHNRL---F 76
Query: 376 SCYHSSKRLSTPSSGRKSPRQKLHCFLSIKNRSSLWS 486
+ Y+S L T R+ R + H FL I +WS
Sbjct: 77 AKYYSDNPLYTDDQFRRRFRMRKHLFLHIVEALGIWS 113
>05_04_0284 -
19813179-19813340,19813464-19813748,19813850-19814131,
19814224-19814531,19814654-19814927,19815807-19816175,
19816372-19816434,19817495-19817789,19817818-19818008,
19818123-19818428,19818516-19818638
Length = 885
Score = 28.7 bits (61), Expect = 4.8
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Frame = +2
Query: 248 HPFHNDNHKATRTHNTSPQTRILRAVITTKRH--RPIQPLLATVYLATTRASDSVHRHQA 421
H + HKA R ++S + + H RP PLL TV + S+ Q
Sbjct: 33 HKLQSRPHKARRRSSSSISASLSTEREAAEYHSQRPPTPLLDTVNYPIHMKNLSLKELQQ 92
Query: 422 ARAQDRSFIAFYPSRTGPAFG 484
+ RS + F+ S+TG G
Sbjct: 93 LADELRSDVIFHVSKTGGHLG 113
>04_04_0681 - 27225526-27225802,27227163-27227524
Length = 212
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 400 LSTPSSGRKSPRQKLHCFLSIKNRSSLWSNQ 492
L P S +P +LHCFLS + SS S Q
Sbjct: 177 LEPPPSPSPAPAARLHCFLSEDDTSSSGSTQ 207
>03_06_0753 +
36015026-36015256,36015780-36015885,36016132-36016192,
36016278-36016573,36016654-36016793,36016880-36016954,
36017044-36017134,36017677-36017880,36018409-36018453,
36018745-36018830
Length = 444
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Frame = +1
Query: 172 YLPVAMQIIAHLTDQMAFEVDDVTPSSIP--QRQPQS-HQNSQHVPTNQDFTRRHHH 333
YL IAHL D P Q QP+ HQ S H ++D ++HHH
Sbjct: 30 YLRRKRAAIAHLPPSATAAAPDQPKQVRPSNQNQPKKGHQRSHHA-VDKDAAKKHHH 85
>06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258
Length = 700
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 177 PGGHADHSSPHGPDGLRSGRCNSII 251
P GHA+H+ HGP GR +++
Sbjct: 46 PQGHAEHAQGHGPVEFPGGRVPALV 70
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 28.3 bits (60), Expect = 6.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 117 NYQEY*WHHHVDHFKHENPIKF 52
++Q+Y HHH ++H+N I F
Sbjct: 150 HHQQYQQHHHQQQYEHQNRIHF 171
>01_01_0987 + 7803281-7803910,7803989-7804510
Length = 383
Score = 28.3 bits (60), Expect = 6.4
Identities = 35/110 (31%), Positives = 47/110 (42%), Gaps = 5/110 (4%)
Frame = +2
Query: 275 ATRTHNTSP-QTRILRAVITTKRH-RPIQPLL-ATVYLATTRASDSVHRHQAARAQDRSF 445
A T +T+P +R+ A T +RH R P A T+ D HR Q R + RSF
Sbjct: 178 AAATGSTTPGMSRLRHAHSTLERHCRSHTPTTKADRTPRTSGGGDGGHRRQPPRRELRSF 237
Query: 446 IAFYPS--RTGPAFGRTKTSTPKLLPPYEVKISSRSDGFVIDEDLTDDSL 589
A R F K + L EV+ R GFV D++ +SL
Sbjct: 238 SANQQPLVRHQSLFHDKKWKSSSDLESIEVQ-GFRDLGFVFDQEELRESL 286
>11_01_0658 +
5342508-5343602,5343697-5343764,5343994-5344042,
5344217-5344333,5344438-5344506,5344631-5344725,
5345580-5345658,5346499-5346563,5347368-5347461,
5347675-5347744,5348363-5349357
Length = 931
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 268 PQSHQNSQHVPTNQDFTRRHHHQ 336
PQ Q QH+ QD +H HQ
Sbjct: 147 PQHQQQQQHLDAMQDLQHQHQHQ 169
>10_08_0505 +
18384392-18384454,18384593-18384679,18385878-18386409,
18387042-18387564,18387734-18387791
Length = 420
Score = 27.9 bits (59), Expect = 8.4
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +1
Query: 37 ELKCRELYRVFVFKVINMMVPLIFLIINAATSVHTAKQQVQLSDSY-LPVAMQIIAHLTD 213
+L + R FV V + +P+ ++ NAA TAKQ +D + + V + + H
Sbjct: 143 DLASLDSVRQFVANVRRLEMPVDVVVCNAAVYQPTAKQPSFTADGFEMSVGVNHLGHFL- 201
Query: 214 QMAFE-VDDVTPSSIPQRQ 267
+A E + D+T S P ++
Sbjct: 202 -LARELLADLTSSDYPSKR 219
>10_08_0490 + 18279370-18279732,18280776-18280834,18281642-18282728
Length = 502
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 211 DQMAFEVDDVTPSSIPQRQPQSHQNSQHVPTNQDFTRRHHHQASQT 348
DQ ++ +++ + P R S +S HV ++D R+HH QT
Sbjct: 212 DQRQSQMPEMSTARAPPRTGVSPSSSSHV-QDRDDRSRYHHSRDQT 256
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/62 (24%), Positives = 21/62 (33%)
Frame = +1
Query: 256 PQRQPQSHQNSQHVPTNQDFTRRHHHQASQTDSTITGNGLSCYHSSKRLSTPSSGRKSPR 435
P P+ H N HH T S + + H R +PS KSP
Sbjct: 299 PYISPRHRMRPSHYRDNTPSRGEMHHHRDNTPSRVDSSPRRSQHEDFRDRSPSRRDKSPS 358
Query: 436 QK 441
++
Sbjct: 359 ER 360
>06_03_0871 - 25562767-25563509,25563889-25565776
Length = 876
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/53 (28%), Positives = 19/53 (35%)
Frame = +1
Query: 319 RRHHHQASQTDSTITGNGLSCYHSSKRLSTPSSGRKSPRQKLHCFLSIKNRSS 477
RRHHH Q DS + K L + + C + KN SS
Sbjct: 413 RRHHHHQQQQDSPLQHKSNRAIGDVKTLDIAGAREEKASTSTGCCIGRKNDSS 465
>04_04_1598 + 34698260-34698316,34698438-34699544
Length = 387
Score = 27.9 bits (59), Expect = 8.4
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +1
Query: 37 ELKCRELYRVFVFKVINMMVPLIFLIINAATSVHTAKQQVQLSDSY-LPVAMQIIAHLTD 213
+L + R FV +PL L+ NAA TA+Q +D Y + V + + H
Sbjct: 131 DLASLDSVRQFVDNFRRSGMPLDALVCNAAIYRPTARQPTFTADGYEMSVGVNHLGHFL- 189
Query: 214 QMAFEVDDVTPSSIPQRQ 267
+DD+ S P R+
Sbjct: 190 LARLMLDDLKKSDYPSRR 207
>01_06_0803 - 32100502-32101425
Length = 307
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 2/99 (2%)
Frame = +1
Query: 130 SVHTAKQQVQLSDSY-LPVAMQIIAHLTDQMAFEVDDVTPSSIPQRQPQSHQNSQHVPTN 306
SV TA Q L D L +++ L + E+D + P P + + H+P+
Sbjct: 77 SVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKLPPLQFPPQDHLCMGHHHHLPSA 136
Query: 307 QDFTRRH-HHQASQTDSTITGNGLSCYHSSKRLSTPSSG 420
H HH + D + + K + G
Sbjct: 137 MPLMHHHGHHHHADDDKYHVAAAAAALAAEKEAAAAGGG 175
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,314,605
Number of Sequences: 37544
Number of extensions: 478904
Number of successful extensions: 1621
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1620
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -