Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20156
(711 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06) 35 0.057
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_17966| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_5537| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0) 30 2.1
SB_46538| Best HMM Match : A2M (HMM E-Value=2.3e-29) 29 2.8
SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54) 29 2.8
SB_22380| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_18508| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_3417| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_59447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_37127| Best HMM Match : DUF352 (HMM E-Value=3.3) 29 4.9
SB_36998| Best HMM Match : TUDOR (HMM E-Value=0) 29 4.9
SB_4335| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91) 28 6.5
SB_17129| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-07) 28 6.5
SB_5535| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_50941| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_42994| Best HMM Match : NHL (HMM E-Value=8.4e-34) 28 8.6
SB_15074| Best HMM Match : PID (HMM E-Value=0.00012) 28 8.6
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_30541| Best HMM Match : PSI_PsaJ (HMM E-Value=4) 28 8.6
SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)
Length = 1223
Score = 35.1 bits (77), Expect = 0.057
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 4/141 (2%)
Frame = +1
Query: 22 RSSENELKCRELYRVFVFKVINMMVPLIFLIINAATSVHTAKQQVQLSDSYLPVAMQIIA 201
R E + + +E F+ K L+ N + ++ +QQ+ + A Q A
Sbjct: 256 RLQEEQERLQEKQEDFLRKQKEQQEQLLQQQFNQSQTLQLQQQQLAQMLANSLQAKQDKA 315
Query: 202 HLTDQMAFEVDDVTPSSIPQRQPQSH---QNSQHVPTN-QDFTRRHHHQASQTDSTITGN 369
TDQ TP + P+ P++ Q+S P N ++ +R+ + S S T +
Sbjct: 316 IGTDQPEVTSPRATPRASPRASPRASPRDQSSHSSPRNSRNSSRKSSPKPSPRSSRPTSS 375
Query: 370 GLSCYHSSKRLSTPSSGRKSP 432
SS++ S P+SG++SP
Sbjct: 376 RKLSRKSSRKSSRPTSGQQSP 396
>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2396
Score = 32.7 bits (71), Expect = 0.30
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +1
Query: 247 SSIPQRQPQSHQNSQHVPTNQDFTRRHHHQASQTDSTITGNGLSCYHSSKRLSTPSSGRK 426
S+IP +QP S +NS + NQ R + T++ +T NG SS RL+ P K
Sbjct: 142 STIPLKQPHSSRNSS-IFANQRSPRATLCASDITETQLTANGKRLEPSSTRLNEPLKDSK 200
>SB_17966| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 32.7 bits (71), Expect = 0.30
Identities = 28/100 (28%), Positives = 43/100 (43%)
Frame = +1
Query: 118 NAATSVHTAKQQVQLSDSYLPVAMQIIAHLTDQMAFEVDDVTPSSIPQRQPQSHQNSQHV 297
N ATS +T +Q V + YLP + + H+ + P ++ + Q QH+
Sbjct: 50 NTATSSNTKQQHVVQTQQYLPTLSRNMQHVV-----QPQQHLP-TLSRNMQHVVQTQQHL 103
Query: 298 PTNQDFTRRHHHQASQTDSTITGNGLSCYHSSKRLSTPSS 417
PT +H Q Q T + N + + LSTPSS
Sbjct: 104 PTLSG-NMQHVVQTQQHLPTPSRNMQYVVQTQQHLSTPSS 142
>SB_5537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 496
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +2
Query: 269 HKATRTHNTSPQTRILRAVITTKRHRPIQPLLATVYLATTRASDSVHRHQAARAQD 436
H R +++ + + RA+ +T RH Q L +T RA DS RH RA D
Sbjct: 394 HLVPRALDSTSRHLVPRALDSTSRHFVPQALDSTSRHLVPRALDSTSRHLVPRASD 449
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +2
Query: 269 HKATRTHNTSPQTRILRAVITTKRHRPIQPLLATVYLATTRASDSVHRHQAARAQDRSFI 448
H R +++ + + RA+ +T RH + L +T RA DS RH RA D +
Sbjct: 358 HLVPRVLDSTSRHLVPRALDSTSRHLVPRVLDSTSRHLVPRALDSTSRHLVPRALDSTSR 417
Query: 449 AFYP 460
F P
Sbjct: 418 HFVP 421
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +2
Query: 269 HKATRTHNTSPQTRILRAVITTKRHRPIQPLLATVYLATTRASDSVHRHQAARAQD 436
H R +++ + + RA+ +T RH + L +T RA DS RH RA D
Sbjct: 298 HLVARALDSTSRHLVPRALDSTSRHLVPRVLDSTSPHLVARALDSTSRHLVPRALD 353
Score = 27.9 bits (59), Expect = 8.6
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Frame = +2
Query: 290 NTSPQTRILRAVITTKRHRPIQPLLATVYLATTRASDSVHRHQAARAQDRSFIAFYP--- 460
+TSP + RA+ +T RH + L +T R DS RH RA D + P
Sbjct: 330 STSPHL-VARALDSTSRHLVPRALDSTSRHLVPRVLDSTSRHLVPRALDSTSRHLVPRVL 388
Query: 461 -SRTGPAFGRTKTSTPKLLPPYEVKISSR 544
S + R ST + L P + +SR
Sbjct: 389 DSTSRHLVPRALDSTSRHLVPRALDSTSR 417
>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 919
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +1
Query: 265 QPQSHQNSQHVPTNQDFTRRHH-HQASQTDSTITGNG-LSCYHSSKRLSTPSSGR 423
Q HQ QH + RHH H++S ST +G + HS + +TP R
Sbjct: 426 QTSKHQQDQHHHHHHHHHHRHHKHRSSSGHSTTEASGRRASDHSHEMRATPLDSR 480
>SB_46538| Best HMM Match : A2M (HMM E-Value=2.3e-29)
Length = 399
Score = 29.5 bits (63), Expect = 2.8
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +2
Query: 425 RAQDRSFIAFYPSRTGPAFGRTKTSTPKLLPPYEVKI---SSRSDGFVIDEDLTDDSLQY 595
R +D+SF AF SR G + L + +K+ + R DG ID DL DS+ +
Sbjct: 181 RRKDKSFSAFGESRPGSTW----------LTAFVIKVFCTAKRFDGVAIDNDLIRDSITW 230
Query: 596 LTDDVKE 616
L + +E
Sbjct: 231 LLANQRE 237
>SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)
Length = 776
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 293 TSPQTRILRAVITTKRHRPIQ 355
T+PQ R+VIT +RHRPI+
Sbjct: 703 TTPQVANKRSVITRRRHRPIE 723
>SB_22380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 862
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +2
Query: 269 HKATRTHNTSPQTRILRAVITTKRHRPIQPLLATVYLATTRASDSVHRHQAARAQ 433
H + H T+ + + +TT+RH IQ + T TT+ + RH R Q
Sbjct: 389 HVTIQRHVTTQRQVTTQRQVTTQRHVTIQRHVTTQRHVTTQRQVTTQRHVTTRRQ 443
>SB_18508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Frame = +1
Query: 259 QRQPQSHQNSQHVPTNQD-FTRRHHHQASQTDSTITGNGLSCYHSSKRLSTPSSGRKSPR 435
++ P + +S P++Q + + H T S HS++ STPS
Sbjct: 471 KKNPDRNTDSSDTPSSQSALSNQTMHSNRSTPSHQKSPSNQTMHSNR--STPSKQSSPSN 528
Query: 436 QKLHCFLSIKNRSSLWSNQDLNTKTS 513
Q +H S + S SNQ +++ S
Sbjct: 529 QTMHSNRSTPSNQSTPSNQTMHSNRS 554
>SB_3417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 332
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 263 DNHKATRTHNTSPQTRILRAVITTKRHRPIQPLLATVYLATTRASD 400
D++ TR HN + TRI ++ T+ H I A ++ TR ++
Sbjct: 7 DHNMVTRIHNHNMVTRIHNHIMVTRAHNHIMVTRAHNHIMVTRINN 52
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 257 HNDNHKATRTHNTSPQTRILRAVITTKRHRPIQPLLATVYLATTRA 394
HN N TR HN + TRI ++ T+ H I ++ TRA
Sbjct: 231 HNHN-MVTRAHNHNMVTRIHNHIMVTRIHNHIMVTRIHNHIMVTRA 275
>SB_59447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1094
Score = 28.7 bits (61), Expect = 4.9
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Frame = +2
Query: 335 KRHRPIQPLLATVYLATTRASDSVHRHQAARAQDRSFIAFYPSRTGPAFGRTKTSTPKLL 514
KR+ I +AT L T +++ R A R R + FY S L+
Sbjct: 866 KRYGVIFSCMATDTLDTDSCINAIRRFVARRGPIRQIMEFYALLKEQGHALDAESLRTLM 925
Query: 515 PPYEVKISSRSDGFVID--EDLT 577
YE I+SR + D EDLT
Sbjct: 926 AEYECIINSRPLTHMYDDPEDLT 948
>SB_37127| Best HMM Match : DUF352 (HMM E-Value=3.3)
Length = 256
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/64 (23%), Positives = 23/64 (35%)
Frame = +2
Query: 242 LHHPFHNDNHKATRTHNTSPQTRILRAVITTKRHRPIQPLLATVYLATTRASDSVHRHQA 421
+HH N HK+T + + Q R +R + H + T +S H
Sbjct: 37 IHHTVQNSTHKSTEQY--TQQYRTVRTTVQNSTHNSTEQCAQQYRTVRTTVQNSTHNSTE 94
Query: 422 ARAQ 433
AQ
Sbjct: 95 QYAQ 98
>SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)
Length = 2538
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -1
Query: 624 LISSFTSSVKYCKLSSVRSSSITKPSDLLEILTSYGGRSFGVEVLVRPKAG 472
L++S TSS K+ S +S++ + DLLE Y G E L +P+ G
Sbjct: 1054 LVTSITSSSKFYLQDSQSASALDEVMDLLE--GHYRALGEGEEALKKPQVG 1102
>SB_4335| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 948
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Frame = +1
Query: 136 HTAKQQVQLSDSYLPVAMQIIAHLT---DQMAFEVDDVTPSSIPQRQPQSHQNSQHVPTN 306
H K+ +++D YL + HL + F +D + S QP+SHQ Q +
Sbjct: 241 HLHKRIRRVADKYLSELVDKFPHLLWNGKVLHFILDLLQTLSESLEQPESHQTVQMLVPG 300
Query: 307 QDFTRRHHHQASQTDSTITGNGLSC 381
+T H + + T+ C
Sbjct: 301 TSYTLAVHEEMDGREGTVRDFSARC 325
>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
Length = 1249
Score = 28.3 bits (60), Expect = 6.5
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Frame = +1
Query: 166 DSYLPVAMQIIAHLTDQMAFEVDDVTPSSIPQRQPQSHQNSQHVPTNQD-FTRRHHHQAS 342
D P A + DQ+ DVTP+S Q P S S PT+ D T +
Sbjct: 850 DHVTPSASDVPTTSDDQVTPSASDVTPTSDDQVTPSS---SDVTPTSDDQVTPSASDVPT 906
Query: 343 QTDSTITGNGLSCYHSSKRLSTPSS 417
+D +T + + +S TPS+
Sbjct: 907 ASDDQVTQSASNVPTASDNQVTPSA 931
>SB_17129| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-07)
Length = 350
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 214 QMAFEVDDVTPSSIPQRQPQSHQNSQHVPTNQDFTRRHHHQASQ 345
+ F V + T S +PQ Q H+ + NQ T+R QASQ
Sbjct: 268 RQCFPVRNCTISKMPQSQDMDHRRDR----NQSSTKRERAQASQ 307
>SB_5535| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +2
Query: 317 RAVITTKRHRPIQPLLATVYLATTRASDSVHRHQAARAQDRSFIAFYP 460
RA+ +T RH + L +T RA DS RH RA D + F P
Sbjct: 12 RALDSTSRHLVPRALDSTSRHLVPRALDSTSRHLVPRALDSNSRHFVP 59
>SB_50941| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 174 PPGGHADHSSPHGP 215
PP GHADHS+ GP
Sbjct: 82 PPKGHADHSAKGGP 95
>SB_42994| Best HMM Match : NHL (HMM E-Value=8.4e-34)
Length = 750
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 244 PSSIPQRQPQSH-QNSQHVPTNQDFTRRHHHQASQTDS 354
P S + QP H ++SQ V T D +RR+ ++ TDS
Sbjct: 392 PLSNEKSQPSGHSESSQSVKTIGDHSRRYGNENDYTDS 429
>SB_15074| Best HMM Match : PID (HMM E-Value=0.00012)
Length = 1153
Score = 27.9 bits (59), Expect = 8.6
Identities = 24/94 (25%), Positives = 43/94 (45%)
Frame = +1
Query: 97 PLIFLIINAATSVHTAKQQVQLSDSYLPVAMQIIAHLTDQMAFEVDDVTPSSIPQRQPQS 276
P L +N+ T++ TA+Q L +SY+ + ++ D A ++ +V P+ I +
Sbjct: 245 PFSNLYVNS-TNISTARQNSVLDESYVDTYVNVV---KDDEAEDIYEVIPADIITSMKVT 300
Query: 277 HQNSQHVPTNQDFTRRHHHQASQTDSTITGNGLS 378
S+ VP + + R + T ST G S
Sbjct: 301 --QSREVPGSALESERTDSRGCSTTSTTVTPGSS 332
>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 7645
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 518 PYEVKISSRSDGFVIDEDLTDDSLQYLTDDVKELIKIARNP-GDDRVVDVWDGF 676
P+ VK+ S DED TD +T DVKE K + P DD+ V+ + F
Sbjct: 5226 PHVVKVQVSSGQAKKDEDFTDPDPLEVTFDVKEDRKTIQIPITDDQKVEGDESF 5279
>SB_30541| Best HMM Match : PSI_PsaJ (HMM E-Value=4)
Length = 368
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 196 IAHLTDQMAFEVDDVTPSSIPQRQPQSHQNSQHVPTNQD 312
+ HL D++A + D +S R+PQ ++NSQ V + D
Sbjct: 207 LQHLPDEVALPIKDRLRAS---RKPQENENSQEVEKSLD 242
>SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -1
Query: 672 PSQTSTTLSSPGLRAILISSFTSSVKYCKLSSVRSSSITKPSDLLEILTSY 520
PS TSTT +P +S+TS+ Y +S ++ P+ TSY
Sbjct: 42 PSYTSTTSYTPTPSYTCTTSYTSTTSYTSTTSYTPTTSYTPTTSYTPTTSY 92
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,032,912
Number of Sequences: 59808
Number of extensions: 559419
Number of successful extensions: 1922
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1914
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -