Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20156
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   1.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.9  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.0  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 403 STPSSGRKSPRQKLHCFLSIKNRSSLWSNQDLN 501
           + P SGR +  Q+    L++ +R+    N DLN
Sbjct: 360 NVPQSGRVNNTQRNEYLLALSDRNQNVLNNDLN 392


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -1

Query: 669 SQTSTTLSSPGLRAILISSFTSSVKYCKLSSVRSSSITKPSDLL 538
           +  +TT+++P    I +S  T  +     SS   +SIT   D++
Sbjct: 833 TNVTTTINTPTTSVISMSGTTVPITSLPASSTSINSITVEKDVI 876


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 477 PLVEPRPQHQNFCRHTKLKSRAGQ 548
           PLVE +  HQ   +H  ++ + GQ
Sbjct: 162 PLVESQMHHQMHTQHPHMQPQQGQ 185


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +1

Query: 229 VDDVTPSSIPQRQPQSHQNSQHVPTNQDFTRRHHHQASQTD 351
           VD  +PSS     P    +  H   N++ ++ +HH    T+
Sbjct: 33  VDRRSPSSSRSPSPSLLTSQPHQDHNKEKSKNNHHCNQDTE 73


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 187 MQIIAHLTDQMAFEVDDVTP 246
           M+ ++H TD+M F+ D   P
Sbjct: 181 MESLSHTTDEMIFQWDPDVP 200


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 455  YPSRTGPAFGRTKTSTPKLLP 517
            YP R GP +    T+ P++ P
Sbjct: 1459 YPLRLGPCWHAVMTTYPRINP 1479


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,514
Number of Sequences: 438
Number of extensions: 4401
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)