Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20156
         (711 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22380.1 68416.m02825 expressed protein                             32   0.33 
At2g42780.1 68415.m05297 expressed protein                             31   0.57 
At1g20670.1 68414.m02589 DNA-binding bromodomain-containing prot...    31   0.57 
At5g16770.2 68418.m01964 myb family transcription factor (MYB9) ...    30   1.3  
At5g16770.1 68418.m01963 myb family transcription factor (MYB9) ...    30   1.3  
At5g08230.1 68418.m00965 PWWP domain-containing protein putative...    29   2.3  
At2g30250.1 68415.m03682 WRKY family transcription factor              29   2.3  
At1g80730.1 68414.m09472 zinc finger (C2H2 type) family protein ...    29   3.0  
At3g01750.1 68416.m00112 ankyrin repeat family protein contains ...    29   4.0  
At1g50660.1 68414.m05696 expressed protein similar to liver stag...    29   4.0  
At4g05060.1 68417.m00746 vesicle-associated membrane family prot...    28   5.3  
At3g51340.1 68416.m05620 aspartyl protease family protein contai...    28   5.3  
At1g75230.2 68414.m08739 HhH-GPD base excision DNA repair family...    28   7.0  
At1g75230.1 68414.m08740 HhH-GPD base excision DNA repair family...    28   7.0  
At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam ...    27   9.3  
At1g60220.1 68414.m06782 Ulp1 protease family protein contains P...    27   9.3  
At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) famil...    27   9.3  

>At3g22380.1 68416.m02825 expressed protein
          Length = 1550

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 22/76 (28%), Positives = 34/76 (44%)
 Frame = +2

Query: 245 HHPFHNDNHKATRTHNTSPQTRILRAVITTKRHRPIQPLLATVYLATTRASDSVHRHQAA 424
           HH  HN+NH   +  N  P T++ R   ++    P+ PL++T   A      SV R   +
Sbjct: 160 HHHSHNNNH---QRKNNFPPTKVFR---SSPSPAPVSPLVSTWKAADEMIGVSVPRKARS 213

Query: 425 RAQDRSFIAFYPSRTG 472
               R   ++  S TG
Sbjct: 214 ACTKRPHESWASSTTG 229


>At2g42780.1 68415.m05297 expressed protein
          Length = 293

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 23/101 (22%), Positives = 43/101 (42%)
 Frame = +1

Query: 145 KQQVQLSDSYLPVAMQIIAHLTDQMAFEVDDVTPSSIPQRQPQSHQNSQHVPTNQDFTRR 324
           K ++ L  S     +  I   T Q +F +     + +    P + ++  +   N   T++
Sbjct: 172 KAKIDLLKSQEVKNLTAIKRNTIQKSFSISTPKKTGLSANSPSTSRSIPYGGRNLTETKK 231

Query: 325 HHHQASQTDSTITGNGLSCYHSSKRLSTPSSGRKSPRQKLH 447
           +  Q S + S     GLS    S   S PS G+K P ++++
Sbjct: 232 NTIQKSFSISAPKRTGLSANAPSTSRSVPSGGQKLPPRRIN 272


>At1g20670.1 68414.m02589 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 652

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +1

Query: 235 DVTPSSIPQRQPQ-SHQNSQHVPTNQDFTRRHHHQASQTDSTITGNGLSCYHSSKRLSTP 411
           D+   +I Q+Q Q   Q  QH   +QD    HH+  +++ S    N  S  H SKR +  
Sbjct: 21  DLQKRAIKQQQQQLQQQQQQHKNNHQDDDDHHHNNNNRSGSK---NPNSLNHRSKRRNPN 77

Query: 412 SSGRKSP 432
           S+   SP
Sbjct: 78  SNDGDSP 84


>At5g16770.2 68418.m01964 myb family transcription factor (MYB9)
           contains Pfam profile: PF00249 Myb-like DNA-binding
           domain
          Length = 336

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
 Frame = +1

Query: 160 LSDSYLPVAMQIIAHLTD------QMAFEVDDVTPSSIPQRQPQSHQNSQHVPTNQDFTR 321
           L D  L V  QII +  D      Q  F+ D  +   +    P+  + +Q +  N+D   
Sbjct: 224 LEDENLMVKTQIIDNPLDSFSSPIQPGFQDDHNSLPLLVPASPEESKETQRMIKNKDIVD 283

Query: 322 RHHHQASQTDST 357
            HHH AS   S+
Sbjct: 284 YHHHDASNPSSS 295


>At5g16770.1 68418.m01963 myb family transcription factor (MYB9)
           contains Pfam profile: PF00249 Myb-like DNA-binding
           domain
          Length = 336

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
 Frame = +1

Query: 160 LSDSYLPVAMQIIAHLTD------QMAFEVDDVTPSSIPQRQPQSHQNSQHVPTNQDFTR 321
           L D  L V  QII +  D      Q  F+ D  +   +    P+  + +Q +  N+D   
Sbjct: 224 LEDENLMVKTQIIDNPLDSFSSPIQPGFQDDHNSLPLLVPASPEESKETQRMIKNKDIVD 283

Query: 322 RHHHQASQTDST 357
            HHH AS   S+
Sbjct: 284 YHHHDASNPSSS 295


>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
           transcription factor (HUA2) - Arabidopsis thaliana,
           EMBL:AF116556
          Length = 1445

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 464 RTGPAFGRTKTSTPKLLPPYEVKISSRSDGFV-IDEDLTD 580
           R+ PAFG   TSTPK+    +V++S   D FV +  D+ D
Sbjct: 672 RSKPAFGEKPTSTPKVATRLDVEVS--RDTFVNLSADVID 709


>At2g30250.1 68415.m03682 WRKY family transcription factor
          Length = 393

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 425 RAQDRSFIAFYPSRTGPAFGRTKTSTPKLLP 517
           R    SF  +YP RTG    + KT+ P  LP
Sbjct: 25  RVSGSSFGGYYPERTGSGLPKFKTAQPPPLP 55


>At1g80730.1 68414.m09472 zinc finger (C2H2 type) family protein
           (ZFP1) identical to zinc finger protein, ZFP1
           gi|790673|gb|AAA87297; contains zinc finger, C2H2 type,
           domain, Prosite:PS00028
          Length = 228

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 432 KTEASLLSIHQEQVQPLVEPRPQHQNFCRHTKLKSRA 542
           KT +S  S HQ Q + L +PR    N+C+     S+A
Sbjct: 46  KTSSSSTSHHQHQQEQLADPRVFSCNYCQRKFYSSQA 82


>At3g01750.1 68416.m00112 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 664

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/48 (29%), Positives = 29/48 (60%)
 Frame = +1

Query: 385 HSSKRLSTPSSGRKSPRQKLHCFLSIKNRSSLWSNQDLNTKTSAAIRS 528
           +++KR     S + SPR K   F S+++RSS +S   +++ ++++  S
Sbjct: 553 NNNKRTLAVRSNQSSPRAKKKRFGSVRSRSSSFSKISIHSSSTSSTSS 600


>At1g50660.1 68414.m05696 expressed protein similar to liver stage
           antigen-1 (GI:510184) [Plasmodium falciparum]; similar
           to Myosin II heavy chain, non muscle (Swiss-Prot:P08799)
           [Dictyostelium discoideum]; similar to liver stage
           antigen (GI:9916) [Plasmodium falciparum]; similar to
           Kinesin-like protein KLPA (Swiss-Prot:P28739)
           [Emericella nidulans]
          Length = 725

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = +2

Query: 464 RTGPAFGR-TKTSTPKLLPPYEVKISSRSDGFVIDEDLTDDSLQYLTDDV---KELIKIA 631
           R+GP+ GR ++  TP L    E +   RS G V D+D  DD+ Q    +    K+  KIA
Sbjct: 53  RSGPSGGRRSRPETPLLKWKVEDRNKERS-GVVEDDDYEDDNHQVARSETTRRKDRRKIA 111

Query: 632 R 634
           R
Sbjct: 112 R 112


>At4g05060.1 68417.m00746 vesicle-associated membrane family protein
           / VAMP family protein similar to VAP27 GI:6688926
           [Nicotiana plumbaginifolia]
          Length = 287

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
 Frame = +1

Query: 199 AHLTDQMAFEVDDVTPSSIPQRQ-PQSHQNSQHVPTNQDFTRRHHHQASQTDSTITGNGL 375
           A  +  MA     VT S + Q    QS     H P   +   ++HHQ++ T  +++    
Sbjct: 32  ASSSSSMATSSSSVTSSHLNQNYIHQSRHFQYHGPPVVEGLGQNHHQSAATIPSMSSVAR 91

Query: 376 SCYHSSKRLSTPSSGR----KSPRQKLHCFLSIKNRS 474
           S   + +RL    S +      P +++   + IKN S
Sbjct: 92  SLLPTKRRLKLDPSAKLYFPYEPGKQVRSAIKIKNTS 128


>At3g51340.1 68416.m05620 aspartyl protease family protein contains
           Eukaryotic and viral aspartyl proteases active site,
           PROSITE:PS00141
          Length = 518

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 479 FGRTKTSTPKLLPPYEVKISSRSDGFVIDEDLTDDSLQYLTDD 607
           FG  K S+P+ + PY++ +SS +   V    L  D L  +T+D
Sbjct: 162 FGSGKCSSPESICPYQIALSSNT---VTTGTLLQDVLHLVTED 201


>At1g75230.2 68414.m08739 HhH-GPD base excision DNA repair family
           protein contains Pfam domain PF00730: HhH-GPD
           superfamily base excision DNA repair protein
          Length = 394

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 398 RLLEW*QDKPLPVMVESVCDAWW**RRVKSWFV 300
           ++L   +D P P  +E +C+ W   R V SW++
Sbjct: 294 QMLNGMEDLPRPSKMEQLCEKWRPYRSVASWYL 326


>At1g75230.1 68414.m08740 HhH-GPD base excision DNA repair family
           protein contains Pfam domain PF00730: HhH-GPD
           superfamily base excision DNA repair protein
          Length = 391

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 398 RLLEW*QDKPLPVMVESVCDAWW**RRVKSWFV 300
           ++L   +D P P  +E +C+ W   R V SW++
Sbjct: 294 QMLNGMEDLPRPSKMEQLCEKWRPYRSVASWYL 326


>At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam
           profile: PF03399 SAC3/GANP family
          Length = 1720

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 307 QDFTRRHHHQASQTDSTITGNGLSCYHSSKRLST--PSSGRKS 429
           Q+ TRR     + +D  +  + +   H S+R ST  P+SG KS
Sbjct: 305 QEATRRKSSAVAPSDKPLGDDPILSQHDSQRFSTSPPTSGTKS 347


>At1g60220.1 68414.m06782 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 604

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 153 SSAFRLLPPGGHADHSSPHGPDGLRSGRCN 242
           S+ +RLLP  G A+HS+     GL+  + N
Sbjct: 231 SNGWRLLPDVGKAEHSAKQFDSGLKESKGN 260


>At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF02136: Nuclear transport factor
           2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
           RRM, RBD, or RNP domain)
          Length = 428

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 226 EVDDVT-PSSIPQRQPQSHQNSQHVPTNQDFTRRHHHQASQTDSTI 360
           +VD+V  P +IP +QP++ Q +++     +    + H  +Q D+ +
Sbjct: 159 QVDEVAEPVTIPTQQPEAKQTTENTVKKPERAVANGHPKTQEDNVV 204


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,563,905
Number of Sequences: 28952
Number of extensions: 365216
Number of successful extensions: 1340
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1339
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)