Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20155
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    77   3e-15
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    27   1.8  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   5.6  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   7.4  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   7.4  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   9.8  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 76.6 bits (180), Expect = 3e-15
 Identities = 33/56 (58%), Positives = 43/56 (76%)
 Frame = +2

Query: 239 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 406
           L +  +WP+YIR+QR++ +L  RLKVPP I QF +TLDK TA  +FK+L KYRPET
Sbjct: 46  LSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPET 101



 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 45/157 (28%), Positives = 65/157 (41%), Gaps = 8/157 (5%)
 Frame = +3

Query: 174 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGPSISASSARRLYFSVV*KCPLR----STNLP 341
           NPLF  RP++F IGQ IQP RDLSRFV  P       RR   ++  K P         L 
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83

Query: 342 RHWTRLQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSDPAQHSHQ 521
           ++      +  +++   T                       +S  ++         H   
Sbjct: 84  KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVS--KKPYNVKYGLNHVVA 141

Query: 522 AGREEEGALVVIAHDVDPIELVLF----CQRYAVKWA 620
               ++  LV+IA DVDPIELV+F    C++  V +A
Sbjct: 142 LIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYA 178



 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 17/26 (65%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
 Frame = +2

Query: 593 LPALCRKMGVPYCIVKGNP-LGALVH 667
           LPALC+KMGVPY IVK    LG ++H
Sbjct: 166 LPALCKKMGVPYAIVKNKARLGTVIH 191


>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
 Frame = -3

Query: 326 SEGALSDDAEVQPSG------AGCGYTWAIYKSGQVPSWLNALTNGKVLWPLLEERIHDL 165
           S+  L D     PSG      AG G+  AI+ +GQ+  + N  ++ KV+ PL+   I   
Sbjct: 147 SDKVLQDGFRSFPSGHTSFSFAGLGFL-AIFLAGQLKMFRNKTSSWKVVVPLVPLSIASW 205

Query: 164 LGLN 153
           +GL+
Sbjct: 206 IGLS 209


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 287 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 388
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 271 PHPAPEGCTSASSESAPSDQPIYPDTGQDY 360
           PHP      SA S ++P   P+ P T +DY
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -1

Query: 469 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 299
           L F   L  +S  Q  FP  FS     L+NL   +  ++ Q L    + R    +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +2

Query: 359 TAKGLFKILEKYR 397
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,533,099
Number of Sequences: 5004
Number of extensions: 46573
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)