Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20155
(667 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 79 3e-15
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 79 3e-15
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 62 4e-10
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 31 0.82
09_04_0300 - 16488358-16488447,16488684-16489116,16489377-164896... 28 5.8
02_04_0587 + 24110333-24110584,24111193-24111261,24112347-241128... 28 5.8
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 79.0 bits (186), Expect = 3e-15
Identities = 34/55 (61%), Positives = 44/55 (80%)
Frame = +2
Query: 239 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 403
L + +WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 44 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE 98
Score = 51.2 bits (117), Expect = 7e-07
Identities = 45/167 (26%), Positives = 62/167 (37%), Gaps = 5/167 (2%)
Frame = +3
Query: 174 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGPSISASSARRLYFSVV*KCPLRSTNLPRHWT 353
NPLFEKRPK F IG + P +DL RFV P + +R K P R
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 81
Query: 354 R-LQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSDPAQHSHQAGR 530
+ L F + + ++ H
Sbjct: 82 KNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEA-KKPIVVKYGLNHVTYLIE 140
Query: 531 EEEGALVVIAHDVDPIELVLF----CQRYAVKWAYHTALSRAIRSVH 659
+ + LVVIAHDVDPIELV++ C++ V + +R VH
Sbjct: 141 QSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVH 187
Score = 44.4 bits (100), Expect = 8e-05
Identities = 20/26 (76%), Positives = 22/26 (84%), Gaps = 1/26 (3%)
Frame = +2
Query: 593 LPALCRKMGVPYCIVKGNP-LGALVH 667
LPALCRKM VPYCIVKG LG++VH
Sbjct: 162 LPALCRKMEVPYCIVKGKARLGSIVH 187
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 79.0 bits (186), Expect = 3e-15
Identities = 34/55 (61%), Positives = 44/55 (80%)
Frame = +2
Query: 239 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 403
L + +WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 28 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE 82
Score = 50.8 bits (116), Expect = 1e-06
Identities = 40/141 (28%), Positives = 53/141 (37%), Gaps = 1/141 (0%)
Frame = +3
Query: 174 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGPSISASSARRLYFSVV*KCPLRSTNLPRHWT 353
NPLFEKRPK F IG + P +DL RFV P + +R K P R
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 65
Query: 354 R-LQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSDPAQHSHQAGR 530
+ L F + + ++ H
Sbjct: 66 KNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEA-KKPIVVKYGLNHVTYLIE 124
Query: 531 EEEGALVVIAHDVDPIELVLF 593
+ + LVVIAHDVDPIELV++
Sbjct: 125 QSKAQLVVIAHDVDPIELVVW 145
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 62.1 bits (144), Expect = 4e-10
Identities = 28/55 (50%), Positives = 40/55 (72%)
Frame = +2
Query: 239 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 403
L + RWPK +RIQRQ+ VL++RLKVPP +NQFT+TLDK ++L++ + E
Sbjct: 45 LHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDKNLGCQKERLLKRAQAE 99
Score = 44.4 bits (100), Expect = 8e-05
Identities = 19/30 (63%), Positives = 21/30 (70%)
Frame = +3
Query: 174 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGP 263
NPLFEKRPK F IG + P +DL RFV P
Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWP 52
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/26 (73%), Positives = 22/26 (84%), Gaps = 1/26 (3%)
Frame = +2
Query: 593 LPALCRKMGVPYCIVKGNP-LGALVH 667
LPALCRKM +PYCIVKG LG++VH
Sbjct: 147 LPALCRKMEIPYCIVKGKARLGSIVH 172
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +3
Query: 531 EEEGALVVIAHDVDPIELVLF 593
+ + LVVIAHDVDPIELV++
Sbjct: 126 QSKAQLVVIAHDVDPIELVVW 146
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 31.1 bits (67), Expect = 0.82
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 271 PHPAPEGCTSASSESAPSDQP 333
P PAPE +A+ E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
>09_04_0300 -
16488358-16488447,16488684-16489116,16489377-16489642,
16490015-16490044,16490282-16490606,16491752-16492035,
16492154-16492376,16493117-16493173,16494454-16494947
Length = 733
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 511 CCAGSDGVGPLWWRLIFLGNLSFSSFPQ 428
CC V WW L+FL N +SFPQ
Sbjct: 70 CCWLVGCVCSAWWLLLFLYNAMPASFPQ 97
>02_04_0587 +
24110333-24110584,24111193-24111261,24112347-24112850,
24113094-24113336
Length = 355
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -2
Query: 219 PDQWQSSLASSRREDSRSSWAQPF*PPMGRR 127
P SSLA +RR +R AQP PP RR
Sbjct: 24 PSSAASSLAFARRAAARPLRAQPLLPPAARR 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,684,528
Number of Sequences: 37544
Number of extensions: 358929
Number of successful extensions: 1276
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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