Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20155
(667 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X82782-1|CAA58023.1| 271|Drosophila melanogaster ribosomal prot... 121 1e-27
AY089570-1|AAL90308.1| 271|Drosophila melanogaster RE05022p pro... 121 1e-27
AE014298-903|AAF46169.1| 271|Drosophila melanogaster CG3314-PD,... 121 1e-27
AE014298-902|AAN09172.1| 271|Drosophila melanogaster CG3314-PC,... 121 1e-27
AE014298-901|AAN09170.1| 271|Drosophila melanogaster CG3314-PA,... 121 1e-27
AY058343-1|AAL13572.1| 403|Drosophila melanogaster GH11867p pro... 31 1.1
AE014297-1960|AAN13634.1| 403|Drosophila melanogaster CG31344-P... 31 1.1
AE014297-2769|AAF55745.3| 1314|Drosophila melanogaster CG34139-P... 29 4.3
>X82782-1|CAA58023.1| 271|Drosophila melanogaster ribosomal protein
L7a protein.
Length = 271
Score = 121 bits (291), Expect = 1e-27
Identities = 69/144 (47%), Positives = 80/144 (55%), Gaps = 2/144 (1%)
Frame = +2
Query: 239 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 418
L + RWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKTTA LFK+LEKYRPE+
Sbjct: 56 LSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESALAK 115
Query: 419 XXXXXXXXXXXXXXXXXXXXXRPNTIRSGT-TQXXXXXXXXXXXXXXXXXXXXH*AGSLL 595
+P+ + +GT T L
Sbjct: 116 NVRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFL 175
Query: 596 PALCRKMGVPYCIVKGNP-LGALV 664
PALCRKMGVPYCIVKG LG LV
Sbjct: 176 PALCRKMGVPYCIVKGKARLGRLV 199
Score = 52.4 bits (120), Expect = 5e-07
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = +3
Query: 174 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGP 263
N LFEKRPKNF IGQ +QP RDLSRFV P
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWP 63
Score = 35.9 bits (79), Expect = 0.049
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = +3
Query: 531 EEEGALVVIAHDVDPIELVLF 593
+++ LVVIAHDVDP+ELVLF
Sbjct: 154 QKKAQLVVIAHDVDPLELVLF 174
>AY089570-1|AAL90308.1| 271|Drosophila melanogaster RE05022p
protein.
Length = 271
Score = 121 bits (291), Expect = 1e-27
Identities = 69/144 (47%), Positives = 80/144 (55%), Gaps = 2/144 (1%)
Frame = +2
Query: 239 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 418
L + RWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKTTA LFK+LEKYRPE+
Sbjct: 56 LSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESPLAK 115
Query: 419 XXXXXXXXXXXXXXXXXXXXXRPNTIRSGT-TQXXXXXXXXXXXXXXXXXXXXH*AGSLL 595
+P+ + +GT T L
Sbjct: 116 KLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFL 175
Query: 596 PALCRKMGVPYCIVKGNP-LGALV 664
PALCRKMGVPYCIVKG LG LV
Sbjct: 176 PALCRKMGVPYCIVKGKARLGRLV 199
Score = 52.4 bits (120), Expect = 5e-07
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = +3
Query: 174 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGP 263
N LFEKRPKNF IGQ +QP RDLSRFV P
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWP 63
Score = 35.9 bits (79), Expect = 0.049
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = +3
Query: 531 EEEGALVVIAHDVDPIELVLF 593
+++ LVVIAHDVDP+ELVLF
Sbjct: 154 QKKAQLVVIAHDVDPLELVLF 174
>AE014298-903|AAF46169.1| 271|Drosophila melanogaster CG3314-PD,
isoform D protein.
Length = 271
Score = 121 bits (291), Expect = 1e-27
Identities = 69/144 (47%), Positives = 80/144 (55%), Gaps = 2/144 (1%)
Frame = +2
Query: 239 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 418
L + RWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKTTA LFK+LEKYRPE+
Sbjct: 56 LSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESPLAK 115
Query: 419 XXXXXXXXXXXXXXXXXXXXXRPNTIRSGT-TQXXXXXXXXXXXXXXXXXXXXH*AGSLL 595
+P+ + +GT T L
Sbjct: 116 KLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFL 175
Query: 596 PALCRKMGVPYCIVKGNP-LGALV 664
PALCRKMGVPYCIVKG LG LV
Sbjct: 176 PALCRKMGVPYCIVKGKARLGRLV 199
Score = 52.4 bits (120), Expect = 5e-07
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = +3
Query: 174 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGP 263
N LFEKRPKNF IGQ +QP RDLSRFV P
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWP 63
Score = 35.9 bits (79), Expect = 0.049
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = +3
Query: 531 EEEGALVVIAHDVDPIELVLF 593
+++ LVVIAHDVDP+ELVLF
Sbjct: 154 QKKAQLVVIAHDVDPLELVLF 174
>AE014298-902|AAN09172.1| 271|Drosophila melanogaster CG3314-PC,
isoform C protein.
Length = 271
Score = 121 bits (291), Expect = 1e-27
Identities = 69/144 (47%), Positives = 80/144 (55%), Gaps = 2/144 (1%)
Frame = +2
Query: 239 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 418
L + RWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKTTA LFK+LEKYRPE+
Sbjct: 56 LSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESPLAK 115
Query: 419 XXXXXXXXXXXXXXXXXXXXXRPNTIRSGT-TQXXXXXXXXXXXXXXXXXXXXH*AGSLL 595
+P+ + +GT T L
Sbjct: 116 KLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFL 175
Query: 596 PALCRKMGVPYCIVKGNP-LGALV 664
PALCRKMGVPYCIVKG LG LV
Sbjct: 176 PALCRKMGVPYCIVKGKARLGRLV 199
Score = 52.4 bits (120), Expect = 5e-07
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = +3
Query: 174 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGP 263
N LFEKRPKNF IGQ +QP RDLSRFV P
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWP 63
Score = 35.9 bits (79), Expect = 0.049
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = +3
Query: 531 EEEGALVVIAHDVDPIELVLF 593
+++ LVVIAHDVDP+ELVLF
Sbjct: 154 QKKAQLVVIAHDVDPLELVLF 174
>AE014298-901|AAN09170.1| 271|Drosophila melanogaster CG3314-PA,
isoform A protein.
Length = 271
Score = 121 bits (291), Expect = 1e-27
Identities = 69/144 (47%), Positives = 80/144 (55%), Gaps = 2/144 (1%)
Frame = +2
Query: 239 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 418
L + RWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKTTA LFK+LEKYRPE+
Sbjct: 56 LSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESPLAK 115
Query: 419 XXXXXXXXXXXXXXXXXXXXXRPNTIRSGT-TQXXXXXXXXXXXXXXXXXXXXH*AGSLL 595
+P+ + +GT T L
Sbjct: 116 KLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFL 175
Query: 596 PALCRKMGVPYCIVKGNP-LGALV 664
PALCRKMGVPYCIVKG LG LV
Sbjct: 176 PALCRKMGVPYCIVKGKARLGRLV 199
Score = 52.4 bits (120), Expect = 5e-07
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = +3
Query: 174 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGP 263
N LFEKRPKNF IGQ +QP RDLSRFV P
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWP 63
Score = 35.9 bits (79), Expect = 0.049
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = +3
Query: 531 EEEGALVVIAHDVDPIELVLF 593
+++ LVVIAHDVDP+ELVLF
Sbjct: 154 QKKAQLVVIAHDVDPLELVLF 174
>AY058343-1|AAL13572.1| 403|Drosophila melanogaster GH11867p
protein.
Length = 403
Score = 31.5 bits (68), Expect = 1.1
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = -2
Query: 294 TAFWRWMRIYLGHLQIWTSPELAECPDQWQSSLASSRREDSRSSWA 157
TA+ R++R H Q W + +A+ ++ +S+A+ RR SRSS A
Sbjct: 130 TAYRRYVRTIF-HTQAWYNHNIADRGSRFWTSIAAVRRAHSRSSHA 174
>AE014297-1960|AAN13634.1| 403|Drosophila melanogaster CG31344-PA
protein.
Length = 403
Score = 31.5 bits (68), Expect = 1.1
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = -2
Query: 294 TAFWRWMRIYLGHLQIWTSPELAECPDQWQSSLASSRREDSRSSWA 157
TA+ R++R H Q W + +A+ ++ +S+A+ RR SRSS A
Sbjct: 130 TAYRRYVRTIF-HTQAWYNHNIADRGSRFWTSIAAVRRAHSRSSHA 174
>AE014297-2769|AAF55745.3| 1314|Drosophila melanogaster CG34139-PA
protein.
Length = 1314
Score = 29.5 bits (63), Expect = 4.3
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 468 SLHQRGPTPSDPAQHSH-QAGREEEGALVVI 557
SLHQ+ P P +P +H+H G + A V++
Sbjct: 901 SLHQQVPYPPEPIKHAHYHMGHSQSSANVIV 931
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,510,780
Number of Sequences: 53049
Number of extensions: 558414
Number of successful extensions: 2067
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2067
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2868730650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -