Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20154
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    29   0.49 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   3.5  
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    25   6.1  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.0  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    25   8.0  

>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +1

Query: 190 TL*LFNVGTEKVLRMLRG---SATCISWSDDSKYILQVNSKGLVEILS 324
           TL LF+   E VL +        TC++WS D K+I       LV I S
Sbjct: 345 TLKLFDFVKEHVLDVFHSYFAGLTCVTWSPDGKFIAIGGKDDLVSIYS 392


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 439 NDMGHEEPNVIKTFPTPSHQSAVTS 513
           ++M H+ PN+ KT PTP  +  + S
Sbjct: 357 SEMTHKNPNLRKTGPTPGPKPKIKS 381


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 428 NGNVMIWDTKNRMS*KRFQHLHTSLL*LRSYNAKNTSLAATMQNGDTVIY 577
           +G V+++D  +R         HT  +   S+NAK+T LA    + +  IY
Sbjct: 500 SGKVVLYDANSREVITSRWAFHTGRILGMSWNAKSTHLATASLDTNIHIY 549



 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 250 TCISWSDDSKYILQVNSKGLVEILSAADHDV 342
           TC+++S D KY+   ++ G V +  A   +V
Sbjct: 483 TCLAYSPDGKYLACGDASGKVVLYDANSREV 513


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +1

Query: 235 LRGSATCISWSDDSKYILQVNSKGLVEILSAADHDVRSLQHLSLKDSWCASFH 393
           L  S++    S  S + L  +S  LV   S++     SL H S   S  +S+H
Sbjct: 106 LTSSSSASPTSSSSSHALSSSSSSLVASSSSSGMSSSSLSHSSSVPSSSSSYH 158


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 161 YFTSASSRLLLYDCLTWELKKSYGCYEGLLRVFHGA-TTANTY 286
           +FTS S  + +Y  L+  L  S   Y  ++ V+H +  T+N Y
Sbjct: 466 FFTSGSKNIGIYSLLSRVLVISSTAYFLIMFVYHSSWVTSNAY 508


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,325,394
Number of Sequences: 5004
Number of extensions: 45538
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)