Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20154
         (580 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0471 - 3672309-3672740,3673159-3673251,3673271-3673399,367...    31   0.66 
01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,356...    30   1.2  
09_02_0391 + 8482996-8483216,8484146-8484194,8484559-8487465           30   1.5  
06_03_0269 - 18991203-18991307,18991448-18991525,18992724-189929...    28   4.7  
06_03_0437 - 20765682-20765951,20766040-20766294,20766374-207665...    27   8.2  

>12_01_0471 -
           3672309-3672740,3673159-3673251,3673271-3673399,
           3673400-3673448,3674291-3674378,3674477-3674573,
           3675195-3675278,3675377-3675464,3676589-3676715,
           3676774-3676848,3676934-3677042,3677125-3677448,
           3677863-3678039
          Length = 623

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 241 GSATCISWSDDSKYILQVNSKGLVEILSAADHDV 342
           G+  C +WS D KY+L      LV++ S  D  +
Sbjct: 382 GALLCCTWSSDGKYLLTGGEDDLVQVWSMDDRKI 415


>01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,
            3560853-3561491,3562154-3562450,3562553-3563407,
            3564363-3564545,3565041-3565118,3565762-3565974,
            3566075-3566238,3566357-3566445,3566761-3566891,
            3566980-3567148,3567255-3567327,3567525-3567606,
            3567677-3567808,3568743-3568818,3568965-3569065,
            3569446-3569636,3569738-3569912,3570604-3570854,
            3571327-3571603,3572184-3572267,3572496-3573206
          Length = 1867

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 22/77 (28%), Positives = 39/77 (50%)
 Frame = -3

Query: 434  YRSWSTAMLRWPSRWKLAHQLSFNDKCCKLRTS*SAADNISTKPFEFTCNMYLLSSLHEI 255
            Y +W+ + LR  SRW   +Q+ F+D C +  +S S   N ST   + +    L   L ++
Sbjct: 1386 YAAWAISFLR--SRWLSKNQIIFDDDCSQRNSSDS---NQSTSFSDESLVWNLSQWLRDL 1440

Query: 254  HVADPRNIRRTFSVPTL 204
            +   P ++  T +V T+
Sbjct: 1441 NFEKPDSMVSTSTVATV 1457


>09_02_0391 + 8482996-8483216,8484146-8484194,8484559-8487465
          Length = 1058

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 352 VNSGRRDPLQIIFQLSLLNSPAICICCR 269
           V+ GR+ P  +IF     N+ ++C CCR
Sbjct: 75  VDEGRKTPKTLIFPRDERNASSVCRCCR 102


>06_03_0269 -
           18991203-18991307,18991448-18991525,18992724-18992910,
           18993096-18993265,18994228-18994306,18995006-18995220,
           18995346-18995429,18995732-18995734
          Length = 306

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -2

Query: 168 VKYIFLVIHQHLELRKLTYAEPVN*SIK-NLRVSNTIILNKTFMKNK 31
           V  +  +IH +++   LTY +P    I  NL++  T IL +  +K K
Sbjct: 61  VPSVIYLIHNNVQFATLTYVDPSTYQIMGNLKIVTTGILFRLVLKRK 107


>06_03_0437 - 20765682-20765951,20766040-20766294,20766374-20766545,
            20766964-20767097,20767205-20767288,20767369-20767659,
            20767867-20768214,20768321-20768496,20768579-20768695,
            20768780-20768936,20769110-20769225,20769323-20769483,
            20769567-20769883,20769969-20770250,20770347-20770648,
            20771977-20772067,20773203-20773256,20773723-20773812
          Length = 1138

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 459  FFVSHIITLPFLVYGYVTMAISVETRTPTVF 367
            FFVS+   L F  YG +T+AIS       +F
Sbjct: 1000 FFVSYFSFLYFTYYGMMTVAISPNHEVAAIF 1030


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,253,643
Number of Sequences: 37544
Number of extensions: 274250
Number of successful extensions: 598
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)