Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20154
(580 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC111949-1|AAI11950.1| 523|Homo sapiens melanoma antigen family... 32 1.3
BC093964-1|AAH93964.1| 523|Homo sapiens melanoma antigen family... 32 1.3
AL391495-2|CAI40175.1| 523|Homo sapiens melanoma antigen family... 32 1.3
AK094624-1|BAC04387.1| 523|Homo sapiens protein ( Homo sapiens ... 32 1.3
AF490509-1|AAM08356.1| 523|Homo sapiens hepatocellular carcinom... 32 1.3
AK097033-1|BAC04931.1| 224|Homo sapiens protein ( Homo sapiens ... 30 5.1
BC028387-1|AAH28387.1| 569|Homo sapiens WD repeat domain 20 pro... 29 9.0
AL133558-1|CAB63713.1| 338|Homo sapiens hypothetical protein pr... 29 9.0
AF327354-1|AAL56014.1| 572|Homo sapiens DMR protein protein. 29 9.0
AB209148-1|BAD92385.1| 439|Homo sapiens WD repeat domain 20 iso... 29 9.0
>BC111949-1|AAI11950.1| 523|Homo sapiens melanoma antigen family E,
2 protein.
Length = 523
Score = 32.3 bits (70), Expect = 1.3
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -3
Query: 548 SLLN*YSWHCSYEVTADWCEGVGNVFMTFGSSCPISL 438
SL++ + HCS E+TAD+ +G G + T S P S+
Sbjct: 2 SLVSQNARHCSAEITADYGDGRGEIQATNASGSPTSM 38
>BC093964-1|AAH93964.1| 523|Homo sapiens melanoma antigen family E,
2 protein.
Length = 523
Score = 32.3 bits (70), Expect = 1.3
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -3
Query: 548 SLLN*YSWHCSYEVTADWCEGVGNVFMTFGSSCPISL 438
SL++ + HCS E+TAD+ +G G + T S P S+
Sbjct: 2 SLVSQNARHCSAEITADYGDGRGEIQATNASGSPTSM 38
>AL391495-2|CAI40175.1| 523|Homo sapiens melanoma antigen family E,
2 protein.
Length = 523
Score = 32.3 bits (70), Expect = 1.3
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -3
Query: 548 SLLN*YSWHCSYEVTADWCEGVGNVFMTFGSSCPISL 438
SL++ + HCS E+TAD+ +G G + T S P S+
Sbjct: 2 SLVSQNARHCSAEITADYGDGRGEIQATNASGSPTSM 38
>AK094624-1|BAC04387.1| 523|Homo sapiens protein ( Homo sapiens
cDNA FLJ37305 fis, clone BRAMY2016251, weakly similar to
MELANOMA-ASSOCIATED ANTIGEN B2. ).
Length = 523
Score = 32.3 bits (70), Expect = 1.3
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -3
Query: 548 SLLN*YSWHCSYEVTADWCEGVGNVFMTFGSSCPISL 438
SL++ + HCS E+TAD+ +G G + T S P S+
Sbjct: 2 SLVSQNARHCSAEITADYGDGRGEIQATNASGSPTSM 38
>AF490509-1|AAM08356.1| 523|Homo sapiens hepatocellular
carcinoma-associated protein HCA3 protein.
Length = 523
Score = 32.3 bits (70), Expect = 1.3
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -3
Query: 548 SLLN*YSWHCSYEVTADWCEGVGNVFMTFGSSCPISL 438
SL++ + HCS E+TAD+ +G G + T S P S+
Sbjct: 2 SLVSQNARHCSAEITADYGDGRGEIQATNASGSPTSM 38
>AK097033-1|BAC04931.1| 224|Homo sapiens protein ( Homo sapiens
cDNA FLJ39714 fis, clone SMINT2013181. ).
Length = 224
Score = 30.3 bits (65), Expect = 5.1
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 380 HQLSFNDKCCKLRTS*SAADNISTKPFEFTCNMYLLSSLH 261
H L+ D S N+S PF+ TCN LL+SL+
Sbjct: 151 HALTLGDVSGNASCRISTRYNLSASPFQATCNQSLLTSLN 190
>BC028387-1|AAH28387.1| 569|Homo sapiens WD repeat domain 20
protein.
Length = 569
Score = 29.5 bits (63), Expect = 9.0
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 241 GSATCISWSDDSKYILQVNSKGLVEILSAADHDVRSLQH 357
G C+ WS D KYI+ LV + S D V + H
Sbjct: 263 GGLLCVCWSPDGKYIVTGGEDDLVTVWSFVDCRVIARGH 301
>AL133558-1|CAB63713.1| 338|Homo sapiens hypothetical protein
protein.
Length = 338
Score = 29.5 bits (63), Expect = 9.0
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 241 GSATCISWSDDSKYILQVNSKGLVEILSAADHDVRSLQH 357
G C+ WS D KYI+ LV + S D V + H
Sbjct: 32 GGLLCVCWSPDGKYIVTGGEDDLVTVWSFVDCRVIARGH 70
>AF327354-1|AAL56014.1| 572|Homo sapiens DMR protein protein.
Length = 572
Score = 29.5 bits (63), Expect = 9.0
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 241 GSATCISWSDDSKYILQVNSKGLVEILSAADHDVRSLQH 357
G C+ WS D KYI+ LV + S D V + H
Sbjct: 254 GGLLCVCWSPDGKYIVTGGEDDLVTVWSFVDCRVIAKGH 292
>AB209148-1|BAD92385.1| 439|Homo sapiens WD repeat domain 20
isoform 4 variant protein.
Length = 439
Score = 29.5 bits (63), Expect = 9.0
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 241 GSATCISWSDDSKYILQVNSKGLVEILSAADHDVRSLQH 357
G C+ WS D KYI+ LV + S D V + H
Sbjct: 133 GGLLCVCWSPDGKYIVTGGEDDLVTVWSFVDCRVIARGH 171
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,195,879
Number of Sequences: 237096
Number of extensions: 1552027
Number of successful extensions: 2726
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2726
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5985693436
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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