Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20154
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    28   5.5  
AC024857-1|AAK31566.2|  869|Caenorhabditis elegans Temporarily a...    27   9.6  
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    27   9.6  

>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
            protein Y45F10B.10 protein.
          Length = 1592

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 250  TCISWSDDSKYILQVNSKGLVEILSAADHDV 342
            TCI +S DS+Y +  N  G + IL A +  V
Sbjct: 1211 TCIRYSVDSQYCISGNQAGCILILDAQNGGV 1241


>AC024857-1|AAK31566.2|  869|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 305 protein.
          Length = 869

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 235 LRGSATCISWSDDSKYILQVNSKGLVEILSAADHDVRS 348
           L  + TC  W+ DS+ ++   S G +++LS A  ++ S
Sbjct: 153 LPAAVTCGVWAPDSRQLVLGFSTGTIQVLSNAGVNITS 190


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
           protein Y32H12A.8 protein.
          Length = 3901

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +1

Query: 217 EKVLRMLRGSATCISWSDDSKYILQVNSKGLVEILSAADHDVRSLQHLSLKDSWCAS 387
           + V +    SATC+ W   + YIL   S+     + + D  V+    L+  D  C S
Sbjct: 137 KSVFKSHERSATCLDWHATTPYILVSGSRDCT--VKSYDMRVKDNHQLTFSDRNCES 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,866,396
Number of Sequences: 27780
Number of extensions: 258320
Number of successful extensions: 607
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)