Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20154
         (580 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    24   1.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.0  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   6.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   6.7  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   8.8  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   8.8  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +2

Query: 146 ITKKMYFTSASSRLLLYDCLTWELKKSYGC----YEGLLRVFHGATTA 277
           +T  +Y++  SSR L Y      +K  YG     Y+G+  +F+  + A
Sbjct: 262 MTNNLYYSPLSSRSLYYVNTKPFMKSEYGANNVQYQGVQDIFNTESIA 309


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 6/18 (33%), Positives = 15/18 (83%)
 Frame = +1

Query: 313 EILSAADHDVRSLQHLSL 366
           ++LS +D+D+ +++H +L
Sbjct: 499 QVLSMSDYDISNIEHEAL 516


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/51 (21%), Positives = 24/51 (47%)
 Frame = -3

Query: 419 TAMLRWPSRWKLAHQLSFNDKCCKLRTS*SAADNISTKPFEFTCNMYLLSS 267
           T +++ P  +++   L FND+  +   + +  D    K      + YLL++
Sbjct: 152 TKLMKLPPMYEVMPHLYFNDEVMQKAYNIAMGDTADMKKTYNNIDYYLLAA 202


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/51 (21%), Positives = 24/51 (47%)
 Frame = -3

Query: 419 TAMLRWPSRWKLAHQLSFNDKCCKLRTS*SAADNISTKPFEFTCNMYLLSS 267
           T +++ P  +++   L FND+  +   + +  D    K      + YLL++
Sbjct: 152 TKLMKLPPMYEVMPHLYFNDEVMQKAYNIAMGDTADMKKTYNNIDYYLLAA 202


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 159 CISPQQVLVCYF 194
           C+SP  V+ CY+
Sbjct: 104 CMSPPMVINCYY 115


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 159 CISPQQVLVCYF 194
           C+SP  V+ CY+
Sbjct: 70  CMSPPMVINCYY 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,400
Number of Sequences: 438
Number of extensions: 2834
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)