Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20153
(685 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 149 3e-37
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 149 4e-37
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 149 4e-37
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 92 6e-20
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 87 3e-18
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 70 3e-13
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 37 0.003
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.007
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.007
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 34 0.017
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 33 0.029
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 31 0.20
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.27
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.47
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 29 0.83
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 28 1.4
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce... 27 2.5
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 3.3
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 26 5.8
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 26 5.8
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 25 7.7
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 25 7.7
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 149 bits (362), Expect = 3e-37
Identities = 69/78 (88%), Positives = 73/78 (93%)
Frame = +2
Query: 278 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 457
LWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+GQTREH
Sbjct: 77 LWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQTREH 136
Query: 458 ALLAFTLGVKQLIVGVNK 511
ALLA+TLGVKQLIV VNK
Sbjct: 137 ALLAYTLGVKQLIVAVNK 154
Score = 141 bits (341), Expect = 1e-34
Identities = 64/68 (94%), Positives = 66/68 (97%)
Frame = +3
Query: 51 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 230
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 231 DKLKAERE 254
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 65.7 bits (153), Expect = 6e-12
Identities = 29/50 (58%), Positives = 40/50 (80%)
Frame = +1
Query: 508 QMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLE 657
+MD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+E
Sbjct: 154 KMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIE 201
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 149 bits (361), Expect = 4e-37
Identities = 68/78 (87%), Positives = 73/78 (93%)
Frame = +2
Query: 278 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 457
LWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREH
Sbjct: 77 LWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREH 136
Query: 458 ALLAFTLGVKQLIVGVNK 511
ALLA+TLGVKQLIV VNK
Sbjct: 137 ALLAYTLGVKQLIVAVNK 154
Score = 141 bits (341), Expect = 1e-34
Identities = 64/68 (94%), Positives = 66/68 (97%)
Frame = +3
Query: 51 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 230
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 231 DKLKAERE 254
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 65.7 bits (153), Expect = 6e-12
Identities = 29/50 (58%), Positives = 40/50 (80%)
Frame = +1
Query: 508 QMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLE 657
+MD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+E
Sbjct: 154 KMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIE 201
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 149 bits (361), Expect = 4e-37
Identities = 68/78 (87%), Positives = 73/78 (93%)
Frame = +2
Query: 278 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 457
LWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREH
Sbjct: 77 LWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREH 136
Query: 458 ALLAFTLGVKQLIVGVNK 511
ALLA+TLGVKQLIV VNK
Sbjct: 137 ALLAYTLGVKQLIVAVNK 154
Score = 141 bits (341), Expect = 1e-34
Identities = 64/68 (94%), Positives = 66/68 (97%)
Frame = +3
Query: 51 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 230
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 231 DKLKAERE 254
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 65.7 bits (153), Expect = 6e-12
Identities = 29/50 (58%), Positives = 40/50 (80%)
Frame = +1
Query: 508 QMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLE 657
+MD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+E
Sbjct: 154 KMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIE 201
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 92.3 bits (219), Expect = 6e-20
Identities = 40/75 (53%), Positives = 54/75 (72%)
Frame = +2
Query: 287 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 466
FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG + GQTREHA+L
Sbjct: 311 FETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVL 370
Query: 467 AFTLGVKQLIVGVNK 511
A T G+ L+V +NK
Sbjct: 371 ARTQGINHLVVVINK 385
Score = 80.6 bits (190), Expect = 2e-16
Identities = 35/64 (54%), Positives = 47/64 (73%)
Frame = +3
Query: 63 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 242
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 243 AERE 254
ERE
Sbjct: 296 EERE 299
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 86.6 bits (205), Expect = 3e-18
Identities = 41/75 (54%), Positives = 49/75 (65%)
Frame = +2
Query: 287 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 466
FE+ K I DAPGHRDFI MI G S AD AVL+V + FE G +NGQTREHA L
Sbjct: 250 FESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYL 309
Query: 467 AFTLGVKQLIVGVNK 511
LG+ +++V VNK
Sbjct: 310 LRALGISEIVVSVNK 324
Score = 72.5 bits (170), Expect = 5e-14
Identities = 31/63 (49%), Positives = 44/63 (69%)
Frame = +3
Query: 63 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 242
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 243 AER 251
ER
Sbjct: 235 EER 237
Score = 41.1 bits (92), Expect = 1e-04
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = +1
Query: 532 YSEPRFEEIKKEVSSY-IKKIGYNPAAVAFVPISGWHGDNMLE 657
+SE RF+EIK VS + IK +G+ + V FVPIS G N+++
Sbjct: 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQ 372
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 70.1 bits (164), Expect = 3e-13
Identities = 34/76 (44%), Positives = 50/76 (65%)
Frame = +2
Query: 284 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 463
++ET+ + +D PGH D+IKNMITG + D A+++V+A G+ QTREH L
Sbjct: 110 EYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP-------QTREHLL 162
Query: 464 LAFTLGVKQLIVGVNK 511
LA +GVKQ++V +NK
Sbjct: 163 LARQVGVKQIVVYINK 178
Score = 35.1 bits (77), Expect = 0.010
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +3
Query: 57 KEKTHINIVVIGHVDSGKSTTTGHLIYKC 143
++K H+NI IGHVD GK+T T I KC
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC 76
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 36.7 bits (81), Expect = 0.003
Identities = 24/76 (31%), Positives = 36/76 (47%)
Frame = +2
Query: 287 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 466
FE S Y + IID PGH DF + D AVL++ A +G I+ + Q R + +
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRYNVP 199
Query: 467 AFTLGVKQLIVGVNKW 514
+ K +G + W
Sbjct: 200 RISFVNKMDRMGADPW 215
Score = 29.1 bits (62), Expect = 0.63
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 75 NIVVIGHVDSGKSTTTGHLIYKCGGI 152
NI + H+DSGK+T T ++Y G I
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI 86
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.007
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 51 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 146
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 302 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 397
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.007
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 51 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 146
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 302 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 397
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 34.3 bits (75), Expect = 0.017
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = +2
Query: 305 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 484
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 485 KQLIVGVNK 511
K +I+ NK
Sbjct: 163 KHIIILQNK 171
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.5 bits (73), Expect = 0.029
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 287 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 412
F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 215 FDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 30.7 bits (66), Expect = 0.20
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 278 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 412
++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 116 IYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.27
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 302 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 412
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.47
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 314 IIDAPGHRDFIKNMITGTSQADCAVLIV 397
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 28.7 bits (61), Expect = 0.83
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 75 NIVVIGHVDSGKSTTTGHLIYKCG 146
N+ +I H+D+GK+T T ++Y G
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG 53
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 308 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 412
+ +ID PGH DF + + D AV I+ G
Sbjct: 95 INLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 27.9 bits (59), Expect = 1.4
Identities = 27/79 (34%), Positives = 37/79 (46%)
Frame = +2
Query: 395 VAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKWIPLNHHTVSPDLRKSRRKYP 574
VA GT E GI NG E+A+ A +I V++ P++H + KSRR+YP
Sbjct: 47 VAEGTAE---GIVSNG---EYAVGAMGAAPTNIIGSVDQQPPVSHTS-----HKSRRQYP 95
Query: 575 HTSRRLATTQLLSLSCPFL 631
L T S + P L
Sbjct: 96 AEVFELTNTLAASPAPPSL 114
>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 27.1 bits (57), Expect = 2.5
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
Frame = -1
Query: 529 VVQWNPFVYSYDELFDTEGESEQGMLTGLTVL-RDTSFEFTGTGSYDEHSAISLRGSCDH 353
V++ P Y+Y LF E VL + T Y H ++LRG
Sbjct: 61 VLKEEPGKYTYMSLFTMPSTEEDYYFNATRVLIHRLKYHPTTKSKYPIH-ILALRG---- 115
Query: 352 VLDEISVSRSINDGNIVLASFELPESNIDCDTTSRS 245
+DE + R DG V+ + S+I DT+S S
Sbjct: 116 -VDEWKIERFRKDGASVIVIDPIASSDIVYDTSSFS 150
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 317 IDAPGHRDFIKNMITGTSQADCAVLIV 397
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 508 QMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLELQPKCL 675
+MD E + E +F + + S++K+ F+PISG G N+ + + L
Sbjct: 418 KMDEIE--WDENKFINLVNSIQSFLKESCGIIEKSKFIPISGLKGTNLTSISQEKL 471
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 237 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSNDQWWWT 109
V +PK I I++ F P S S C+Y S+D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 25.4 bits (53), Expect = 7.7
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +2
Query: 533 TVSPDLRKSRRKYPHTSRRLATTQLLSLSC 622
+ +PD+ ++PHT +R +T + L + C
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRC 174
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 25.4 bits (53), Expect = 7.7
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = -1
Query: 325 SINDGNIVLASFELPESNIDCDTTSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIP 146
S++ + L S+ P S T A ++YL+ PL S S S + +R SIP
Sbjct: 305 SVDSASTALNSYSTPNSVSRKLTNLTPAARRLVARSYLRSPLHGSSPSASRHTALRTSIP 364
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,889,129
Number of Sequences: 5004
Number of extensions: 60179
Number of successful extensions: 255
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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