Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20153
(685 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 153 1e-37
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 153 1e-37
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 151 5e-37
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 146 2e-35
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 3e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 107 7e-24
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 107 7e-24
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 99 3e-21
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 66 2e-11
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 66 2e-11
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 64 1e-10
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 64 1e-10
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 64 1e-10
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 38 0.005
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 37 0.012
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 35 0.062
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.082
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.19
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.25
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.25
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 32 0.33
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.77
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.77
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 31 0.77
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 30 1.3
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 30 1.3
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 1.8
AF022984-10|AAB69958.1| 358|Caenorhabditis elegans Hypothetical... 30 1.8
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 2.3
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 2.3
AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical ... 29 2.3
AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical ... 29 2.3
AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. 29 2.3
AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. 29 2.3
Z47808-7|CAA87771.2| 934|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 4.1
AC024801-9|AAF59653.3| 791|Caenorhabditis elegans Hypothetical ... 28 5.4
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 27 9.4
L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclas... 27 9.4
AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical ... 27 9.4
AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 27 9.4
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 153 bits (371), Expect = 1e-37
Identities = 71/78 (91%), Positives = 74/78 (94%)
Frame = +2
Query: 278 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 457
LWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREH
Sbjct: 77 LWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREH 136
Query: 458 ALLAFTLGVKQLIVGVNK 511
ALLA TLGVKQLIV NK
Sbjct: 137 ALLAQTLGVKQLIVACNK 154
Score = 146 bits (353), Expect = 2e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +3
Query: 51 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 230
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 231 DKLKAERE 254
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 85.0 bits (201), Expect = 4e-17
Identities = 38/51 (74%), Positives = 44/51 (86%)
Frame = +1
Query: 508 QMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEL 660
+MDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE+
Sbjct: 154 KMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEV 204
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 153 bits (371), Expect = 1e-37
Identities = 71/78 (91%), Positives = 74/78 (94%)
Frame = +2
Query: 278 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 457
LWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREH
Sbjct: 77 LWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREH 136
Query: 458 ALLAFTLGVKQLIVGVNK 511
ALLA TLGVKQLIV NK
Sbjct: 137 ALLAQTLGVKQLIVACNK 154
Score = 146 bits (353), Expect = 2e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +3
Query: 51 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 230
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 231 DKLKAERE 254
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 85.0 bits (201), Expect = 4e-17
Identities = 38/51 (74%), Positives = 44/51 (86%)
Frame = +1
Query: 508 QMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEL 660
+MDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE+
Sbjct: 154 KMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEV 204
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 151 bits (366), Expect = 5e-37
Identities = 84/125 (67%), Positives = 89/125 (71%)
Frame = +2
Query: 278 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 457
LWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREH
Sbjct: 77 LWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREH 136
Query: 458 ALLAFTLGVKQLIVGVNKWIPLNHHTVSPDLRKSRRKYPHTSRRLATTQLLSLSCPFLDG 637
ALLA TLGVKQL + L T SPD +SRR T Q L D
Sbjct: 137 ALLAQTLGVKQL-------VSLRSPTRSPD----------SSRRSDTIQRLFHLSQSPDS 179
Query: 638 TETTC 652
TETTC
Sbjct: 180 TETTC 184
Score = 146 bits (353), Expect = 2e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +3
Query: 51 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 230
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 231 DKLKAERE 254
DKLKAERE
Sbjct: 61 DKLKAERE 68
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 146 bits (353), Expect = 2e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +3
Query: 51 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 230
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 231 DKLKAERE 254
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 89.0 bits (211), Expect = 3e-18
Identities = 38/41 (92%), Positives = 41/41 (100%)
Frame = +2
Query: 278 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 400
LWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 77 LWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 85.0 bits (201), Expect = 4e-17
Identities = 38/51 (74%), Positives = 44/51 (86%)
Frame = +1
Query: 508 QMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEL 660
+MDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE+
Sbjct: 120 KMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEV 170
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 3e-33
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +3
Query: 51 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 230
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 231 DKLKAER 251
DKLK +
Sbjct: 61 DKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 107 bits (257), Expect = 7e-24
Identities = 50/75 (66%), Positives = 58/75 (77%)
Frame = +2
Query: 287 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 466
FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQT+EHALL
Sbjct: 243 FETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALL 302
Query: 467 AFTLGVKQLIVGVNK 511
+LGV QLIV VNK
Sbjct: 303 LRSLGVTQLIVAVNK 317
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/65 (55%), Positives = 48/65 (73%)
Frame = +3
Query: 60 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 239
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 240 KAERE 254
+ ERE
Sbjct: 227 EEERE 231
Score = 34.3 bits (75), Expect = 0.082
Identities = 15/43 (34%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Frame = +1
Query: 532 YSEPRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLE 657
+S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++
Sbjct: 323 WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK 363
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 107 bits (257), Expect = 7e-24
Identities = 50/75 (66%), Positives = 58/75 (77%)
Frame = +2
Query: 287 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 466
FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQT+EHALL
Sbjct: 261 FETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALL 320
Query: 467 AFTLGVKQLIVGVNK 511
+LGV QLIV VNK
Sbjct: 321 LRSLGVTQLIVAVNK 335
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/65 (55%), Positives = 48/65 (73%)
Frame = +3
Query: 60 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 239
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 240 KAERE 254
+ ERE
Sbjct: 245 EEERE 249
Score = 34.3 bits (75), Expect = 0.082
Identities = 15/43 (34%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Frame = +1
Query: 532 YSEPRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLE 657
+S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++
Sbjct: 341 WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK 381
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 99.1 bits (236), Expect = 3e-21
Identities = 43/75 (57%), Positives = 56/75 (74%)
Frame = +2
Query: 287 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 466
FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A GEFE G + GQTREH++L
Sbjct: 182 FETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGGQTREHSML 241
Query: 467 AFTLGVKQLIVGVNK 511
T GVK L++ VNK
Sbjct: 242 VKTAGVKHLVILVNK 256
Score = 79.0 bits (186), Expect = 3e-15
Identities = 34/67 (50%), Positives = 48/67 (71%)
Frame = +3
Query: 54 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 233
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 234 KLKAERE 254
ERE
Sbjct: 164 TNDEERE 170
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +1
Query: 508 QMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAA-VAFVPISGWHG 642
+MD + E RF+EI+ +++ +++K+G+NP + +VP SG G
Sbjct: 256 KMDDPTVKWEEERFKEIEGKLTPFLRKLGFNPKTDITYVPCSGLTG 301
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 66.5 bits (155), Expect = 2e-11
Identities = 34/64 (53%), Positives = 42/64 (65%)
Frame = +2
Query: 320 DAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 499
D PGH DFIKNMI GTSQ D AVL++AA G E QT+EH +LA +GVK + +
Sbjct: 114 DCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAI 166
Query: 500 GVNK 511
+NK
Sbjct: 167 FINK 170
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 63 KTHINIVVIGHVDSGKSTTT 122
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 66.5 bits (155), Expect = 2e-11
Identities = 34/64 (53%), Positives = 42/64 (65%)
Frame = +2
Query: 320 DAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 499
D PGH DFIKNMI GTSQ D AVL++AA G E QT+EH +LA +GVK + +
Sbjct: 114 DCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAI 166
Query: 500 GVNK 511
+NK
Sbjct: 167 FINK 170
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 63 KTHINIVVIGHVDSGKSTTT 122
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 63.7 bits (148), Expect = 1e-10
Identities = 36/78 (46%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Frame = +2
Query: 284 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 463
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 106 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 158
Query: 464 LAFTLGV--KQLIVGVNK 511
LA +GV ++V +NK
Sbjct: 159 LARQVGVPLDNIVVFMNK 176
Score = 36.3 bits (80), Expect = 0.020
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 57 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 227
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 228 LDKLKAER 251
L+ A+R
Sbjct: 105 LEYETAKR 112
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 63.7 bits (148), Expect = 1e-10
Identities = 36/78 (46%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Frame = +2
Query: 284 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 463
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 159
Query: 464 LAFTLGV--KQLIVGVNK 511
LA +GV ++V +NK
Sbjct: 160 LARQVGVPLDNIVVFMNK 177
Score = 36.3 bits (80), Expect = 0.020
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 57 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 227
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 228 LDKLKAER 251
L+ A+R
Sbjct: 106 LEYETAKR 113
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 63.7 bits (148), Expect = 1e-10
Identities = 36/78 (46%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Frame = +2
Query: 284 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 463
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 159
Query: 464 LAFTLGV--KQLIVGVNK 511
LA +GV ++V +NK
Sbjct: 160 LARQVGVPLDNIVVFMNK 177
Score = 36.3 bits (80), Expect = 0.020
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 57 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 227
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 228 LDKLKAER 251
L+ A+R
Sbjct: 106 LEYETAKR 113
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 38.3 bits (85), Expect = 0.005
Identities = 25/86 (29%), Positives = 43/86 (50%)
Frame = +2
Query: 308 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 487
+ +ID PGH I+ ++ ++ D A++I+ + AGI QT EH LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPN 126
Query: 488 QLIVGVNKWIPLNHHTVSPDLRKSRR 565
++I+ +NK +S +K R+
Sbjct: 127 RVIIVLNKCDLAEKSKISESAKKVRK 152
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 72 INIVVIGHVDSGKSTTT 122
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 37.1 bits (82), Expect = 0.012
Identities = 27/68 (39%), Positives = 31/68 (45%)
Frame = +2
Query: 308 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 487
VT +D PGH F G AD VL+VAA G E QT + A V
Sbjct: 206 VTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE-------QTAQSIKFAKDANV- 257
Query: 488 QLIVGVNK 511
QL+V VNK
Sbjct: 258 QLVVAVNK 265
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 34.7 bits (76), Expect = 0.062
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -2
Query: 516 IHLFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 382
++LF PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 11 LNLFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.3 bits (75), Expect = 0.082
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 75 NIVVIGHVDSGKSTTTGHLIYKCGGI 152
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 75 NIVVIGHVDSGKSTTTGHLIYKCGGID 155
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 51 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 146
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 302 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 412
+ + +ID+PGH DF + D A+++V +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 51 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 146
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 302 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 412
+ + +ID+PGH DF + D A+++V +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 32.3 bits (70), Expect = 0.33
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 75 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 191
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
Score = 31.9 bits (69), Expect = 0.44
Identities = 23/70 (32%), Positives = 33/70 (47%)
Frame = +2
Query: 302 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG 481
Y + +ID PGH DF + + D +L+VAA G QT + LAF
Sbjct: 102 YLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG-------VQAQTIANFWLAFEKN 154
Query: 482 VKQLIVGVNK 511
+ Q+I +NK
Sbjct: 155 I-QIIPVINK 163
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.77
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 27 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 137
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.77
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 27 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 137
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 31.1 bits (67), Expect = 0.77
Identities = 19/69 (27%), Positives = 30/69 (43%)
Frame = +2
Query: 305 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 484
+V+ +D PGH + M+ G + D A L+VA QT EH + +
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQL 181
Query: 485 KQLIVGVNK 511
L++ NK
Sbjct: 182 NHLMILQNK 190
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 293 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 412
+ Y + IID PGH +F M AD V++V A G
Sbjct: 198 SKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 293 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 412
+ Y + IID PGH +F M AD V++V A G
Sbjct: 73 SKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 314 IIDAPGHRDFIKNMITGTSQADCAVLIV 397
IID PGH F G+S D A+L+V
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580
>AF022984-10|AAB69958.1| 358|Caenorhabditis elegans Hypothetical
protein ZK488.1 protein.
Length = 358
Score = 29.9 bits (64), Expect = 1.8
Identities = 33/123 (26%), Positives = 54/123 (43%)
Frame = +2
Query: 278 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 457
++KFE+S + +T + K ITGT VL+V+ +F K+ Q
Sbjct: 104 VYKFESSLHRLTFGLTKSRTEDYKTKITGTLGKLQIVLVVSEAFWKFLNKRYKSAQIFFA 163
Query: 458 ALLAFTLGVKQLIVGVNKWIPLNHHTVSPDLRKSRRKYPHTSRRLATTQLLSLSCPFLDG 637
F L + + I + W L+ H+ + RKS YP+ A TQ++S +D
Sbjct: 164 FFPNFQLKILECIWHI--WATLDRHSATAVYRKS---YPNA----APTQIVSRRGVLMDL 214
Query: 638 TET 646
+T
Sbjct: 215 AKT 217
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 153 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 254
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 153 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 254
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical
protein H30A04.1b protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 572 PHTSRRLATTQLLSLSCPFLD 634
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical
protein H30A04.1a protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 572 PHTSRRLATTQLLSLSCPFLD 634
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 572 PHTSRRLATTQLLSLSCPFLD 634
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 572 PHTSRRLATTQLLSLSCPFLD 634
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>Z47808-7|CAA87771.2| 934|Caenorhabditis elegans Hypothetical
protein D2013.5 protein.
Length = 934
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 168 EKFEKEAQEMGKGSFKYAWVLDKLKAEREVVSQSILLS 281
E+ +K +EM K +Y L++L+ E +V+ Q +LLS
Sbjct: 211 ERIQKLQEEMLKTQSQYQRELERLEKENKVLKQRLLLS 248
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 72 INIVVIGHVDSGKSTTT 122
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>AC024801-9|AAF59653.3| 791|Caenorhabditis elegans Hypothetical
protein Y50D7A.1 protein.
Length = 791
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 199 VKDPSNMLGYWTN*RLSVRWYHNRYCSLEVRN*QVLCYHH*CSWTQ-RFHQEHDHRN 366
V +P N W + RW+ ++ +EVR V + CS FHQ D RN
Sbjct: 352 VTNPLNDTWRWKSIPTIGRWWGRKFLQMEVRGEAVFRLNPECSMPNIEFHQIADVRN 408
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 308 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 403
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 308 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 397
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 308 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 397
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclase
protein.
Length = 1276
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 482 VKQLIVGVNKWIPLNHHTVSPDLRKSRRKYPHTSRRLATTQLLS 613
V ++ G+N IP+ + P L S+++YP +R + +LL+
Sbjct: 134 VTKVTAGLNGGIPILTTSGMPSLLNSKKEYPFLTRMQGSYRLLA 177
>AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical
protein T01A4.1c protein.
Length = 1276
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 482 VKQLIVGVNKWIPLNHHTVSPDLRKSRRKYPHTSRRLATTQLLS 613
V ++ G+N IP+ + P L S+++YP +R + +LL+
Sbjct: 134 VTKVTAGLNGGIPILTTSGMPSLLNSKKEYPFLTRMQGSYRLLA 177
>AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.15 protein.
Length = 299
Score = 27.5 bits (58), Expect = 9.4
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Frame = -1
Query: 493 ELFDTEGESEQGMLTGLTVLRDTSFEF-----TGTGSYDEHSAISLRGSCDH--VLDEIS 335
E + +E E G+ L V RD F + +GTGS + H ++R DH + +
Sbjct: 24 EHYTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDHGVISENFK 83
Query: 334 VSRSINDGNI 305
S S +D I
Sbjct: 84 FSGSKSDAEI 93
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,189,494
Number of Sequences: 27780
Number of extensions: 342506
Number of successful extensions: 1138
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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