Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20151
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    28   1.3  
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...    27   3.1  
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...    27   3.1  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    26   7.1  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    26   7.1  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    25   9.4  
SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   9.4  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    25   9.4  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   9.4  

>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 483 PKKESWCTRGFRFTPPKQETFFKDDANHDPQWSEEQIIS 599
           P  +SW    ++  PPK +  F+  ++HD    +   I+
Sbjct: 470 PSFDSWTAVPYQAPPPKYDDIFQSGSSHDENHDDNYFIN 508


>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +1

Query: 334 QTNAKVFEILKSAGIKTAFVKIASETAFLSKKCEMIPIEWVTRRLATGSFLKRNPGVPEA 513
           QTN ++ + +     K    KIA  T  L K+ +  P+  ++ +L      +++  VPE 
Sbjct: 29  QTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEV 88

Query: 514 S 516
           S
Sbjct: 89  S 89


>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +1

Query: 334 QTNAKVFEILKSAGIKTAFVKIASETAFLSKKCEMIPIEWVTRRLATGSFLKRNPGVPEA 513
           QTN ++ + +     K    KIA  T  L K+ +  P+  ++ +L      +++  VPE 
Sbjct: 29  QTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEV 88

Query: 514 S 516
           S
Sbjct: 89  S 89


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 748 CIDSEFYFHVNKCAVTQTQAFSKISNIRIVAFL 650
           C+ S   + +N    ++T+ FSKISN+  V FL
Sbjct: 304 CLGSVLIY-LNMKFASKTKGFSKISNVFFVIFL 335


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +3

Query: 477 LVPKKE--SWCTRGFRF--TPPKQETFFKDDANHDPQWSEEQIISAKF 608
           L+P K+  S C    +F  TPP   + F +D +H P +S ++++   F
Sbjct: 342 LIPLKKFHSKCFNSKQFFRTPPPGLSDFVNDLSHHPIFSNDEVVRVFF 389


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = -3

Query: 754 TFCIDSEFYFHVNKCAVTQTQAFSKISNIRIVAFLM*CSSRP 629
           TFC+        N+   T+  A SKISN      L  C S P
Sbjct: 134 TFCLGKTAPSDKNRYTTTECLACSKISNETAENLLFLCLSSP 175


>SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 139

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = +1

Query: 280 RSDGVKAHDLEGKAAISNQTNAKVFEILKSAGIKTAFVKIASETAFLSKK 429
           RSD   A+DL+   AI N+T   V E +       A     SE+  +SKK
Sbjct: 14  RSD--PAYDLDSSTAIENETKLSVKEKVAKEIANIALRSGGSESNGISKK 61


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 248 PRLVRNIEYLFGLTLNEKFAQFILSN 171
           P+L+ N+  L  L++NEK+  F++ N
Sbjct: 53  PKLLLNLFSLENLSMNEKYQVFVVLN 78


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 483 ERASCKAAGNPFNGDHLTF 427
           +R + K  GN F GDH  F
Sbjct: 21  KRRASKVVGNSFGGDHFNF 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,473,740
Number of Sequences: 5004
Number of extensions: 74988
Number of successful extensions: 205
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)