Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20150
(525 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62249 Cluster: 40S ribosomal protein S16; n=64; Eukary... 120 2e-26
UniRef50_Q4PM67 Cluster: Ribosomal protein S16; n=5; Eukaryota|R... 117 2e-25
UniRef50_Q5AQG2 Cluster: Putative uncharacterized protein; n=1; ... 96 5e-19
UniRef50_P40213 Cluster: 40S ribosomal protein S16; n=87; Eukary... 93 3e-18
UniRef50_Q8SSC2 Cluster: 40S RIBOSOMAL PROTEIN S16; n=1; Encepha... 84 2e-15
UniRef50_Q4PHH7 Cluster: Putative uncharacterized protein; n=1; ... 83 4e-15
UniRef50_Q4Q9A5 Cluster: 40S ribosomal protein S16, putative; n=... 77 2e-13
UniRef50_Q7R487 Cluster: GLP_480_84573_84097; n=1; Giardia lambl... 72 9e-12
UniRef50_O59299 Cluster: 30S ribosomal protein S9P; n=4; Archaea... 71 1e-11
UniRef50_Q3LWA6 Cluster: Ribosomal protein S16; n=1; Bigelowiell... 68 1e-10
UniRef50_Q6ZWL6 Cluster: CDNA FLJ40618 fis, clone THYMU2013089, ... 66 5e-10
UniRef50_Q9YB48 Cluster: 30S ribosomal protein S9P; n=10; Thermo... 56 4e-07
UniRef50_A0RXP4 Cluster: 30S ribosomal protein S9P; n=2; Thermop... 53 5e-06
UniRef50_UPI0000DA28A7 Cluster: PREDICTED: similar to ribosomal ... 51 2e-05
UniRef50_A5WDK8 Cluster: Ribosomal protein S9; n=2; Proteobacter... 44 0.002
UniRef50_Q1NYV6 Cluster: 30S ribosomal protein S9; n=1; Candidat... 43 0.005
UniRef50_A6DDR0 Cluster: 30S ribosomal protein S9; n=1; Caminiba... 43 0.005
UniRef50_Q6F0X3 Cluster: 30S ribosomal protein S9; n=19; Bacteri... 42 0.007
UniRef50_A3CEI4 Cluster: Putative uncharacterized protein; n=1; ... 42 0.009
UniRef50_Q83AX9 Cluster: 30S ribosomal protein S9; n=101; Bacter... 40 0.046
UniRef50_A6C0N9 Cluster: 30S ribosomal protein S9; n=1; Planctom... 39 0.061
UniRef50_Q8FS19 Cluster: 30S ribosomal protein S9; n=32; Bacteri... 37 0.33
UniRef50_A1CMA0 Cluster: 37S ribosomal protein S9; n=7; Eurotiom... 35 1.00
UniRef50_Q9PKR2 Cluster: 30S ribosomal protein S9; n=3; Chlamydi... 35 1.00
UniRef50_P47656 Cluster: 30S ribosomal protein S9; n=5; Firmicut... 35 1.3
UniRef50_Q8YPK7 Cluster: 30S ribosomal protein S9; n=26; cellula... 35 1.3
UniRef50_O51313 Cluster: 30S ribosomal protein S9; n=87; cellula... 34 1.7
UniRef50_Q9KGD4 Cluster: 30S ribosomal protein S9; n=22; Bacteri... 34 1.7
UniRef50_A7PLL5 Cluster: Chromosome chr7 scaffold_20, whole geno... 34 2.3
UniRef50_Q9SMU5 Cluster: 30S ribosomal protein S9-like; n=6; cor... 33 3.0
UniRef50_Q82DL8 Cluster: 30S ribosomal protein S9; n=23; cellula... 33 3.0
UniRef50_O51322 Cluster: Fibronectin/fibrinogen-binding protein,... 33 5.3
UniRef50_Q9AR08 Cluster: 9S ribosomal protein; n=4; Poaceae|Rep:... 33 5.3
UniRef50_Q1UZ81 Cluster: 30S ribosomal protein S9; n=2; Candidat... 32 7.0
UniRef50_Q3ZJ40 Cluster: Chloroplast 30S ribosomal protein S9; n... 32 7.0
UniRef50_Q08PN8 Cluster: Polyketide synthase; n=1; Stigmatella a... 32 9.3
UniRef50_A4AKU1 Cluster: Putative uncharacterized protein; n=1; ... 32 9.3
UniRef50_Q5CYT3 Cluster: Shares a domain with the CWFL/SRm300 fa... 32 9.3
>UniRef50_P62249 Cluster: 40S ribosomal protein S16; n=64;
Eukaryota|Rep: 40S ribosomal protein S16 - Homo sapiens
(Human)
Length = 146
Score = 120 bits (290), Expect = 2e-26
Identities = 53/70 (75%), Positives = 66/70 (94%)
Frame = +1
Query: 10 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 189
+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+ V
Sbjct: 7 LQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGV 66
Query: 190 DIRVTVKGGG 219
DIRV VKGGG
Sbjct: 67 DIRVRVKGGG 76
Score = 119 bits (286), Expect = 5e-26
Identities = 54/60 (90%), Positives = 58/60 (96%)
Frame = +2
Query: 248 SYSKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 427
S SKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPRRCE KKFGGPGARARYQKSYR
Sbjct: 87 SISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>UniRef50_Q4PM67 Cluster: Ribosomal protein S16; n=5; Eukaryota|Rep:
Ribosomal protein S16 - Ixodes scapularis (Black-legged
tick) (Deer tick)
Length = 148
Score = 117 bits (281), Expect = 2e-25
Identities = 52/58 (89%), Positives = 56/58 (96%)
Frame = +2
Query: 254 SKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 427
SKAL+A+YQKYVDE SKKEIKD L+QYDR+LLVADPRRCEPKKFGGPGARARYQKSYR
Sbjct: 91 SKALVAYYQKYVDEQSKKEIKDTLIQYDRTLLVADPRRCEPKKFGGPGARARYQKSYR 148
Score = 116 bits (278), Expect = 4e-25
Identities = 53/73 (72%), Positives = 64/73 (87%)
Frame = +1
Query: 1 RHEIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 180
+ IQ+VQV GRKKTATAVAYCKRG+G+L+VNGRPL+ +EP L+YKL EPILLLGKE+F
Sbjct: 6 KEAIQSVQVLGRKKTATAVAYCKRGNGLLKVNGRPLENIEPLTLRYKLLEPILLLGKERF 65
Query: 181 SMVDIRVTVKGGG 219
+ VDIR+ VKGGG
Sbjct: 66 AGVDIRIRVKGGG 78
>UniRef50_Q5AQG2 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized
protein - Emericella nidulans (Aspergillus nidulans)
Length = 155
Score = 95.9 bits (228), Expect = 5e-19
Identities = 43/58 (74%), Positives = 50/58 (86%)
Frame = +2
Query: 254 SKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 427
+K+L+A+YQKYVDE SK ++K VQYDR+LLVAD RR EPKKFGG GARARYQKSYR
Sbjct: 98 AKSLVAYYQKYVDEHSKNQLKQAFVQYDRTLLVADNRRAEPKKFGGRGARARYQKSYR 155
Score = 36.7 bits (81), Expect = 0.33
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = +1
Query: 148 EPILLLGKEKFSMVDIRVTVKGGG 219
EP+L++G +KF+ VDIRV V GGG
Sbjct: 62 EPVLIVGADKFAGVDIRVRVTGGG 85
>UniRef50_P40213 Cluster: 40S ribosomal protein S16; n=87;
Eukaryota|Rep: 40S ribosomal protein S16 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 143
Score = 93.5 bits (222), Expect = 3e-18
Identities = 40/70 (57%), Positives = 57/70 (81%)
Frame = +1
Query: 10 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 189
+ +VQ FG+KK+ATAVA+ K G G+++VNG P+ LVEP +L++K+ EP+LL+G +KFS +
Sbjct: 4 VPSVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPEILRFKVYEPLLLVGLDKFSNI 63
Query: 190 DIRVTVKGGG 219
DIRV V GGG
Sbjct: 64 DIRVRVTGGG 73
Score = 87.4 bits (207), Expect = 2e-16
Identities = 38/58 (65%), Positives = 47/58 (81%)
Frame = +2
Query: 254 SKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 427
+K L+A++QKYVDE SK E+K YDR+LL+AD RR EPKKFGG GAR+R+QKSYR
Sbjct: 86 AKGLVAYHQKYVDEQSKNELKKAFTSYDRTLLIADSRRPEPKKFGGKGARSRFQKSYR 143
>UniRef50_Q8SSC2 Cluster: 40S RIBOSOMAL PROTEIN S16; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S16
- Encephalitozoon cuniculi
Length = 145
Score = 83.8 bits (198), Expect = 2e-15
Identities = 38/60 (63%), Positives = 48/60 (80%)
Frame = +2
Query: 248 SYSKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 427
+++KA++AFY Y DE K+EI+ L+ +DR LVAD R+ EPKKFGGPGARARYQKSYR
Sbjct: 86 AFAKAILAFYGTYFDEWKKQEIQKRLLDFDRFSLVADSRKREPKKFGGPGARARYQKSYR 145
>UniRef50_Q4PHH7 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 199
Score = 83.0 bits (196), Expect = 4e-15
Identities = 37/58 (63%), Positives = 46/58 (79%)
Frame = +2
Query: 254 SKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 427
+K+L+A+Y KY D AS E++ + V YDR+LL+AD RR EPKKFGG GARAR QKSYR
Sbjct: 142 AKSLVAYYAKYYDAASALELRQLFVAYDRTLLIADTRRSEPKKFGGHGARARRQKSYR 199
Score = 79.4 bits (187), Expect = 5e-14
Identities = 31/56 (55%), Positives = 49/56 (87%)
Frame = +1
Query: 16 AVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFS 183
+V FG+KKTATAVA+CK G G++R+NG+P+ LV+P +L++K+ EP+L++G++KFS
Sbjct: 5 SVSCFGKKKTATAVAHCKEGKGLIRLNGQPISLVQPEILRWKVFEPVLVVGEDKFS 60
>UniRef50_Q4Q9A5 Cluster: 40S ribosomal protein S16, putative; n=7;
Trypanosomatidae|Rep: 40S ribosomal protein S16,
putative - Leishmania major
Length = 149
Score = 77.4 bits (182), Expect = 2e-13
Identities = 34/58 (58%), Positives = 43/58 (74%)
Frame = +2
Query: 254 SKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 427
+K LIAF+QKY +E K +KD + YD+ LL+ADPRRCEPKK+G AR R+ KSYR
Sbjct: 92 AKGLIAFFQKYHNEVEKAALKDKFLAYDKFLLIADPRRCEPKKWGRHSARTRFTKSYR 149
Score = 55.6 bits (128), Expect = 7e-07
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Frame = +1
Query: 4 HEIQAVQVFGRKKTATAVA-YCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 180
+ ++ VQ FG+KKTA AVA K ++VNG PL + P L+ K+ E I ++G + +
Sbjct: 7 YALKQVQTFGKKKTAIAVATVTKAAQCNIKVNGVPLQQILPDTLRAKIMEAITVVGSKYY 66
Query: 181 SMVDIRVTVKGGG 219
S + I V V GGG
Sbjct: 67 SRLRIDVAVHGGG 79
>UniRef50_Q7R487 Cluster: GLP_480_84573_84097; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_480_84573_84097 - Giardia lamblia
ATCC 50803
Length = 158
Score = 71.7 bits (168), Expect = 9e-12
Identities = 32/46 (69%), Positives = 38/46 (82%)
Frame = +2
Query: 290 DEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 427
DEA++ E++ LV YDR L+V+DPRRCE KKFGG GARAR QKSYR
Sbjct: 113 DEAARSELRAKLVSYDRQLVVSDPRRCEAKKFGGRGARARRQKSYR 158
Score = 66.1 bits (154), Expect = 5e-10
Identities = 30/67 (44%), Positives = 43/67 (64%)
Frame = +1
Query: 19 VQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIR 198
V G+KK + AVA+ K G G + VN PL LV P +L+ K+ EPI++LG+ F +D+
Sbjct: 25 VHTLGKKKNSVAVAFVKAGKGDILVNNVPLALVRPEILRTKVSEPIMILGESLFKGLDMN 84
Query: 199 VTVKGGG 219
+ V GGG
Sbjct: 85 IKVAGGG 91
>UniRef50_O59299 Cluster: 30S ribosomal protein S9P; n=4;
Archaea|Rep: 30S ribosomal protein S9P - Pyrococcus
horikoshii
Length = 135
Score = 71.3 bits (167), Expect = 1e-11
Identities = 28/70 (40%), Positives = 51/70 (72%)
Frame = +1
Query: 10 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 189
++ +Q G++KTA A A + G G +R+NG+P++++EP + ++ + EP++L G+E ++ V
Sbjct: 1 MRIIQTTGKRKTAIARAVIREGRGRVRINGKPVEIIEPEIARFTILEPLILAGEEIWNSV 60
Query: 190 DIRVTVKGGG 219
DI V V+GGG
Sbjct: 61 DIDVKVQGGG 70
Score = 46.8 bits (106), Expect = 3e-04
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = +2
Query: 260 ALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKK--FGGPGARARYQKSYR 427
A IA + V+ +K+ ++YDR++LV DPRR EP K G RA+ QKSYR
Sbjct: 78 ARIAIARALVEWTGDMNLKEKFIKYDRTMLVGDPRRTEPHKPNRSTKGPRAKRQKSYR 135
>UniRef50_Q3LWA6 Cluster: Ribosomal protein S16; n=1; Bigelowiella
natans|Rep: Ribosomal protein S16 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 139
Score = 68.1 bits (159), Expect = 1e-10
Identities = 30/60 (50%), Positives = 41/60 (68%)
Frame = +2
Query: 248 SYSKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 427
S SK L+ +Y KY+ + +K + YD+ LL++D R EPKK+GG GARAR+QKSYR
Sbjct: 80 SISKCLVFYYYKYISASKSNLLKIKYLTYDKKLLISDVSRIEPKKYGGLGARARFQKSYR 139
Score = 59.3 bits (137), Expect = 5e-08
Identities = 25/67 (37%), Positives = 42/67 (62%)
Frame = +1
Query: 19 VQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIR 198
+Q FG+KK A A+ K+G G +++NG P++LV P ++ K+ EP +LG + ++
Sbjct: 3 IQCFGKKKNAIAITTAKKGSGKIKINGVPINLVHPLDIKNKILEPFFILGSNERLNLNFD 62
Query: 199 VTVKGGG 219
+ KGGG
Sbjct: 63 IFSKGGG 69
>UniRef50_Q6ZWL6 Cluster: CDNA FLJ40618 fis, clone THYMU2013089,
moderately similar to 40S RIBOSOMAL PROTEIN S16; n=2;
Homo sapiens|Rep: CDNA FLJ40618 fis, clone THYMU2013089,
moderately similar to 40S RIBOSOMAL PROTEIN S16 - Homo
sapiens (Human)
Length = 178
Score = 66.1 bits (154), Expect = 5e-10
Identities = 33/70 (47%), Positives = 46/70 (65%)
Frame = +1
Query: 10 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 189
+Q+VQ+F K+ A AV C+ G G +R+N PL+++ LQYKL E LLL KE+ + +
Sbjct: 18 LQSVQIFTYKEMAIAVVLCRCGSGFIRMNEGPLEMIRLLTLQYKLLELGLLLDKEQLAGM 77
Query: 190 DIRVTVKGGG 219
DI V VKG G
Sbjct: 78 DIHVRVKGSG 87
Score = 33.1 bits (72), Expect = 4.0
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = +2
Query: 254 SKALIAFYQKYVDEASKKEIKDILVQ 331
SKAL+ Y KYVDEAS +EIKD L +
Sbjct: 100 SKALVPCYPKYVDEAS-EEIKDTLTR 124
>UniRef50_Q9YB48 Cluster: 30S ribosomal protein S9P; n=10;
Thermoprotei|Rep: 30S ribosomal protein S9P - Aeropyrum
pernix
Length = 151
Score = 56.4 bits (130), Expect = 4e-07
Identities = 26/64 (40%), Positives = 42/64 (65%)
Frame = +1
Query: 31 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 210
G++K A A A + G G + +NG PL++ + + K+ EP+L+ G+ S+VDIRV V+
Sbjct: 11 GKRKRAIARAVIRPGRGRVWINGVPLEIYPIEMARIKMMEPLLIAGEGVRSLVDIRVRVE 70
Query: 211 GGGM 222
GGG+
Sbjct: 71 GGGV 74
Score = 48.4 bits (110), Expect = 1e-04
Identities = 21/49 (42%), Positives = 36/49 (73%)
Frame = +2
Query: 281 KYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 427
+ +D+ S+ +++ +++DR++LV DPRR EP+K+ AR R+QKSYR
Sbjct: 104 RMMDKISR-DLRTAFLEHDRTMLVGDPRRTEPEKYMRYSARRRWQKSYR 151
>UniRef50_A0RXP4 Cluster: 30S ribosomal protein S9P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S9P -
Cenarchaeum symbiosum
Length = 149
Score = 52.8 bits (121), Expect = 5e-06
Identities = 22/45 (48%), Positives = 33/45 (73%)
Frame = +2
Query: 293 EASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 427
+ ++++++ + +D+ L+ D RR EPKKFGGPGAR R QKSYR
Sbjct: 105 KTAREDLRKRIGDFDKYLISGDARRKEPKKFGGPGARRRKQKSYR 149
Score = 40.3 bits (90), Expect = 0.026
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = +1
Query: 28 FGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 207
F +K A+A Y +G G +R+N P +++ + + P+ + G + VDI V V
Sbjct: 10 FATRKAASAHVYIIKGTGRVRINNVPAEMIVHESAREAILAPLDIAGDAR-KKVDISVRV 68
Query: 208 KGGG 219
KGGG
Sbjct: 69 KGGG 72
>UniRef50_UPI0000DA28A7 Cluster: PREDICTED: similar to ribosomal
protein S16; n=1; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein S16 - Rattus norvegicus
Length = 102
Score = 50.8 bits (116), Expect = 2e-05
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Frame = +1
Query: 10 IQAVQVFGRKKTATAVAYCKRGHGMLRVNG-RPLDLVEPRLLQYKLQEPILLLGKEKFSM 186
+Q+ QVFG KK A +A +G +++V L++ EP QY+L +PIL LGKE+F+
Sbjct: 26 LQSKQVFGCKKKA--IAMHAKGKWLIKVTDVHLLEMTEPVKQQYQLLDPILPLGKERFAR 83
Query: 187 VDIRVTVKGGG 219
V I V V G G
Sbjct: 84 VGIWVRVNGVG 94
>UniRef50_A5WDK8 Cluster: Ribosomal protein S9; n=2;
Proteobacteria|Rep: Ribosomal protein S9 - Psychrobacter
sp. PRwf-1
Length = 128
Score = 44.4 bits (100), Expect = 0.002
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = +1
Query: 31 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPR-LLQYKLQEPILLLGKEKFSMVDIRVTV 207
GR+KT+TA + +G G + VNG+PLD R + +++P+ LL + DI TV
Sbjct: 8 GRRKTSTARVFLSKGTGNIVVNGKPLDEYFGRETSRMVVRQPLELL--DSAETYDIYATV 65
Query: 208 KGGGM 222
KGGG+
Sbjct: 66 KGGGI 70
>UniRef50_Q1NYV6 Cluster: 30S ribosomal protein S9; n=1; Candidatus
Sulcia muelleri str. Hc (Homalodisca coagulata)|Rep: 30S
ribosomal protein S9 - Candidatus Sulcia muelleri str.
Hc (Homalodisca coagulata)
Length = 132
Score = 42.7 bits (96), Expect = 0.005
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = +1
Query: 19 VQVFGRKKTATAVAYCKRGHGMLRVNGRPL-DLVEPRLLQYKLQEPILL-LGKEKFSMVD 192
+ GR+KTA A Y K G G+++VN P + LL K+ +P+LL + KF D
Sbjct: 8 IHTIGRRKTAVARMYMKIGSGLIKVNNIPYKNYFNNNLLFNKISKPLLLTYNQNKF---D 64
Query: 193 IRVTVKGGGM 222
+ V GGG+
Sbjct: 65 FYIKVSGGGI 74
>UniRef50_A6DDR0 Cluster: 30S ribosomal protein S9; n=1;
Caminibacter mediatlanticus TB-2|Rep: 30S ribosomal
protein S9 - Caminibacter mediatlanticus TB-2
Length = 144
Score = 42.7 bits (96), Expect = 0.005
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +1
Query: 31 GRKKTATAVAYCKRGHGMLRVNGRPLD--LVEPRLLQYKLQEPILLLGKEKFSMVDIRVT 204
G++K A A + K G G + VNG+PLD L L+ +++ P++L+ +E DI V
Sbjct: 11 GKRKEAVAKVWLKNGSGNITVNGKPLDEFLGGREALKLRVRWPLMLVKQE--GNFDIEVK 68
Query: 205 VKGGG 219
V GGG
Sbjct: 69 VLGGG 73
>UniRef50_Q6F0X3 Cluster: 30S ribosomal protein S9; n=19;
Bacteria|Rep: 30S ribosomal protein S9 - Mesoplasma
florum (Acholeplasma florum)
Length = 131
Score = 42.3 bits (95), Expect = 0.007
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +1
Query: 31 GRKKTATAVAYCKRGHGMLRVNGRP-LDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 207
GR+KT+ A G G + VNG P L+ L L++P++ G EK DI VTV
Sbjct: 11 GRRKTSVAQVILTPGKGNIIVNGVPALEFFPYPTLVQDLEQPLVATGTEK--DFDITVTV 68
Query: 208 KGGG 219
KGGG
Sbjct: 69 KGGG 72
>UniRef50_A3CEI4 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 61
Score = 41.9 bits (94), Expect = 0.009
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = +1
Query: 19 VQVFGRKKTATAVAYCKRGHGMLRV 93
VQ FGRKKTA AV+YCK G G+++V
Sbjct: 13 VQCFGRKKTAVAVSYCKPGRGLIKV 37
>UniRef50_Q83AX9 Cluster: 30S ribosomal protein S9; n=101;
Bacteria|Rep: 30S ribosomal protein S9 - Coxiella
burnetii
Length = 139
Score = 39.5 bits (88), Expect = 0.046
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +1
Query: 31 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPR-LLQYKLQEPILLLGKEKFSMVDIRVTV 207
GR+KT++A + + G G + +NG PLD R + +++P++ L + S D+ TV
Sbjct: 13 GRRKTSSARVFLRSGTGQIIINGLPLDEYFGRETARMVVRQPLVKLDVQ--SRFDVYATV 70
Query: 208 KGGG 219
+GGG
Sbjct: 71 QGGG 74
>UniRef50_A6C0N9 Cluster: 30S ribosomal protein S9; n=1;
Planctomyces maris DSM 8797|Rep: 30S ribosomal protein
S9 - Planctomyces maris DSM 8797
Length = 201
Score = 39.1 bits (87), Expect = 0.061
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1
Query: 31 GRKKTATAVAYCKRGHGMLRVNGRPL-DLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 207
GR+KTA A K G G L +NG+ L D + + ++ P L E F VD+ V V
Sbjct: 81 GRRKTAVARVRIKAGSGSLTINGQSLNDYLRVERDRQMVEAP--LKATETFGKVDVWVRV 138
Query: 208 KGGG 219
GGG
Sbjct: 139 TGGG 142
>UniRef50_Q8FS19 Cluster: 30S ribosomal protein S9; n=32;
Bacteria|Rep: 30S ribosomal protein S9 - Corynebacterium
efficiens
Length = 182
Score = 36.7 bits (81), Expect = 0.33
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 31 GRKKTATAVAYCKRGHGMLRVNGRPL-DLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 207
GR+K A G G + NGR L D +L Q ++ P++LLG+E DI +
Sbjct: 62 GRRKRAIVRVRMVAGSGEITCNGRTLEDYFPNKLHQQLIKAPLVLLGRE--GQFDIHANL 119
Query: 208 KGGG 219
GGG
Sbjct: 120 GGGG 123
>UniRef50_A1CMA0 Cluster: 37S ribosomal protein S9; n=7;
Eurotiomycetidae|Rep: 37S ribosomal protein S9 -
Aspergillus clavatus
Length = 315
Score = 35.1 bits (77), Expect = 1.00
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = +1
Query: 31 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 210
G++KT++AV + G G + VNG+ L PR L + L + ++ TV+
Sbjct: 195 GKRKTSSAVVHLVEGEGEVMVNGKTLGEAFPR-LHDRESATWALRCTSRLDKYNVWATVR 253
Query: 211 GGGM 222
GGG+
Sbjct: 254 GGGV 257
>UniRef50_Q9PKR2 Cluster: 30S ribosomal protein S9; n=3;
Chlamydia|Rep: 30S ribosomal protein S9 - Chlamydia
muridarum
Length = 133
Score = 35.1 bits (77), Expect = 1.00
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +1
Query: 1 RHEIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQ-YKLQEPILLLGKEK 177
++ IQ GR+K A + + G+G + VNG+ L+ P +Q + P+ +LG
Sbjct: 3 KNTIQESVATGRRKQAVSSVRLRSGNGKIDVNGKTLEQYFPLEVQRATILAPLKMLG--D 60
Query: 178 FSMVDIRVTVKGGGM 222
+ D+ + V GGG+
Sbjct: 61 VNSFDLIIRVSGGGV 75
>UniRef50_P47656 Cluster: 30S ribosomal protein S9; n=5;
Firmicutes|Rep: 30S ribosomal protein S9 - Mycoplasma
genitalium
Length = 132
Score = 34.7 bits (76), Expect = 1.3
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Frame = +1
Query: 31 GRKKTATAVAYC--KRGHGMLRVNGR-PLDLVEPRLLQYKLQEPILLLG-KEKFSMVDIR 198
GR+K++TA Y + G + +N R P D +L+ +++P+ L K+ F DI
Sbjct: 10 GRRKSSTAKVYLYQSKDKGKITINHRNPSDYFPNKLVIQDMEQPLELTKLKDNF---DIN 66
Query: 199 VTVKGGG 219
V VKGGG
Sbjct: 67 VVVKGGG 73
>UniRef50_Q8YPK7 Cluster: 30S ribosomal protein S9; n=26; cellular
organisms|Rep: 30S ribosomal protein S9 - Anabaena sp.
(strain PCC 7120)
Length = 138
Score = 34.7 bits (76), Expect = 1.3
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +1
Query: 31 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQY--KLQEPILLLGKEKFSMVDIRVT 204
GR+K+A A G G L VNG+P DL Y ++ P+ LG E + DI V
Sbjct: 17 GRRKSAVARVRLVPGTGQLIVNGKPGDLYFQFNANYLGVIKAPLETLGLE--NEYDILVK 74
Query: 205 VKGGGM 222
+GGG+
Sbjct: 75 AEGGGL 80
>UniRef50_O51313 Cluster: 30S ribosomal protein S9; n=87; cellular
organisms|Rep: 30S ribosomal protein S9 - Borrelia
burgdorferi (Lyme disease spirochete)
Length = 136
Score = 34.3 bits (75), Expect = 1.7
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 31 GRKKTATAVAYCKRGHGMLRVNGRPLD-LVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 207
GR+K++ A Y + G G ++VN R D ++ L+ P++L D+ + V
Sbjct: 16 GRRKSSVARVYIREGSGNIKVNNRDFDSYIQLENLRTMALSPLVL--TNTLGKYDLYINV 73
Query: 208 KGGGM 222
GGG+
Sbjct: 74 YGGGI 78
>UniRef50_Q9KGD4 Cluster: 30S ribosomal protein S9; n=22;
Bacteria|Rep: 30S ribosomal protein S9 - Bacillus
halodurans
Length = 130
Score = 34.3 bits (75), Expect = 1.7
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1
Query: 31 GRKKTATAVAYCKRGHGMLRVNGRPLD-LVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 207
GR+K + A G G + +NGR LD L+ +++P++ G E D+RV V
Sbjct: 10 GRRKHSVARVRLVPGDGNIVINGRSLDEYFGLETLKLIVKQPLVETGTE--GQYDVRVNV 67
Query: 208 KGGG 219
GGG
Sbjct: 68 DGGG 71
>UniRef50_A7PLL5 Cluster: Chromosome chr7 scaffold_20, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr7 scaffold_20, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 651
Score = 33.9 bits (74), Expect = 2.3
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 104 HWTWLSPDC--CSTNFRNLSFCSARKNSLWSTSE*QSRVVACSTSLRYPT 247
H T L DC C N LS C R +LW+TS S++ + LR+ T
Sbjct: 182 HLTSLQKDCFACMPNLMRLSMCETRVANLWTTSAVLSKIPSL-VELRFQT 230
>UniRef50_Q9SMU5 Cluster: 30S ribosomal protein S9-like; n=6; core
eudicotyledons|Rep: 30S ribosomal protein S9-like -
Arabidopsis thaliana (Mouse-ear cress)
Length = 143
Score = 33.5 bits (73), Expect = 3.0
Identities = 20/63 (31%), Positives = 32/63 (50%)
Frame = +1
Query: 31 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 210
GR+K + A + + G G +VN + D+ P +L ++ L + DI+ TVK
Sbjct: 23 GRRKCSIARVWIQPGEGKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVK 81
Query: 211 GGG 219
GGG
Sbjct: 82 GGG 84
>UniRef50_Q82DL8 Cluster: 30S ribosomal protein S9; n=23; cellular
organisms|Rep: 30S ribosomal protein S9 - Streptomyces
avermitilis
Length = 173
Score = 33.5 bits (73), Expect = 3.0
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +1
Query: 7 EIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPL-DLVEPRLLQYKLQEPILLLGKEKFS 183
E Q GR+K A A G G ++NGR L D ++ Q ++ EP +L E
Sbjct: 44 EPQPAAGLGRRKNAIARVRIVPGTGKWKINGRTLEDYFPNKVHQQEVNEPFKVLELE--G 101
Query: 184 MVDIRVTVKGGGM 222
D+ + GGG+
Sbjct: 102 RYDVIARISGGGV 114
>UniRef50_O51322 Cluster: Fibronectin/fibrinogen-binding protein,
putative; n=5; Borrelia|Rep:
Fibronectin/fibrinogen-binding protein, putative -
Borrelia burgdorferi (Lyme disease spirochete)
Length = 475
Score = 32.7 bits (71), Expect = 5.3
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +2
Query: 245 TSYSKALIAFYQKYVDEASKKEIKDILVQ-YDRSLLVADPR 364
TSYS+ L +Y+ D+ K IK++L++ Y + L+V + R
Sbjct: 183 TSYSEFLENYYESLNDQIKKTNIKELLIEKYKKELIVLEKR 223
>UniRef50_Q9AR08 Cluster: 9S ribosomal protein; n=4; Poaceae|Rep: 9S
ribosomal protein - Zea mays (Maize)
Length = 221
Score = 32.7 bits (71), Expect = 5.3
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +1
Query: 13 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLV---EPRLLQYKLQEPILLLGKEKFS 183
Q + GR+KTA A + G G + +N R P ++Y + P++ LG EK
Sbjct: 94 QRITATGRRKTAIARVVLQEGTGKVFINFRDAKEYLQGNPMWMEY-CKVPLMTLGFEK-- 150
Query: 184 MVDIRVTVKGGGM 222
D+ V V GGG+
Sbjct: 151 NYDVFVKVHGGGL 163
>UniRef50_Q1UZ81 Cluster: 30S ribosomal protein S9; n=2; Candidatus
Pelagibacter ubique|Rep: 30S ribosomal protein S9 -
Candidatus Pelagibacter ubique HTCC1002
Length = 149
Score = 32.3 bits (70), Expect = 7.0
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +1
Query: 31 GRKKTATAVAYCKRGHGMLRVNGRPLD-LVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 207
GR+K + A + K+G G + VNGR +D + ++ P ++ + + D+R +V
Sbjct: 29 GRRKKSIAKIWVKKGTGKIYVNGRTMDEYFTSGSHKMQITRPFEIINQA--TDYDVRCSV 86
Query: 208 KGGG 219
GGG
Sbjct: 87 AGGG 90
>UniRef50_Q3ZJ40 Cluster: Chloroplast 30S ribosomal protein S9; n=2;
Eukaryota|Rep: Chloroplast 30S ribosomal protein S9 -
Pseudendoclonium akinetum (Green alga)
Length = 141
Score = 32.3 bits (70), Expect = 7.0
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Frame = +1
Query: 31 GRKKTATAVAYCKRGHGMLRVNG-RPLDLVEPR-LLQYKLQEPILLLG-KEKFSMVDIRV 201
GR+KT+ A G+G +NG ++ ++ + L + +QEP+ L K +F+++ +
Sbjct: 20 GRRKTSIATVQLFPGNGEFTINGISGIEYMQQKEELIFAIQEPLHFLKLKNEFNLI---I 76
Query: 202 TVKGGGM 222
VKGGG+
Sbjct: 77 KVKGGGL 83
>UniRef50_Q08PN8 Cluster: Polyketide synthase; n=1; Stigmatella
aurantiaca DW4/3-1|Rep: Polyketide synthase -
Stigmatella aurantiaca DW4/3-1
Length = 535
Score = 31.9 bits (69), Expect = 9.3
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 338 RSLLVADPRRCEPKKFGGPGARARY 412
RSLL P EP+ + GPGAR RY
Sbjct: 229 RSLLTEAPAPAEPEPWTGPGARVRY 253
>UniRef50_A4AKU1 Cluster: Putative uncharacterized protein; n=1;
marine actinobacterium PHSC20C1|Rep: Putative
uncharacterized protein - marine actinobacterium
PHSC20C1
Length = 492
Score = 31.9 bits (69), Expect = 9.3
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 34 RKKTATAVAYCKRGHGMLRV-NGRPLDLVEPRLLQYKLQEP 153
R TAT+V +RG G RV +G P V R L Y L++P
Sbjct: 229 RPATATSVGATRRGLGWFRVFSGTPTGAVAARALTYWLRDP 269
>UniRef50_Q5CYT3 Cluster: Shares a domain with the CWFL/SRm300
family RNA binding proteins; n=2; Cryptosporidium|Rep:
Shares a domain with the CWFL/SRm300 family RNA binding
proteins - Cryptosporidium parvum Iowa II
Length = 409
Score = 31.9 bits (69), Expect = 9.3
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
Frame = +2
Query: 131 CSTNFRNLSFCSARKNSLWSTSE*QSRVVACSTSLRYPTSYSKALIAFYQKYVDEASKKE 310
CS + N S S + +S S S+ + S S SYSK+ +++ Y ++SKK+
Sbjct: 292 CSRSHSNSSPHSYSNSRSYSNSPSSSQSKSNSYSRSRSNSYSKSRNSYFNNYKQKSSKKK 351
Query: 311 IKDILVQYDRSLL-VADPRRCEPKKFGGPGARARYQKSYR*AFKKTIGWYR 460
+K Y S+ +A+ E KK + RY+K R T+ YR
Sbjct: 352 VK--REAYSSSVRNLAELDSLERKK------KHRYRKPRRSRSPSTVSRYR 394
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 588,877,496
Number of Sequences: 1657284
Number of extensions: 11744964
Number of successful extensions: 30614
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 29765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30605
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33037407449
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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