Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20150
         (525 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    27   0.13 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   6.7  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   8.8  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   8.8  

>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 26.6 bits (56), Expect = 0.13
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 153 RFLKFVLQQSGLNQVQWTPVYTQHSMTTLAIR 58
           R++K VL +SG++   +T   T+H+ T+ A R
Sbjct: 268 RWIKMVLAESGVDTSIYTAHSTRHAATSAAAR 299


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 5/12 (41%), Positives = 8/12 (66%)
 Frame = +2

Query: 98  GVHWTWLSPDCC 133
           G+ W ++  DCC
Sbjct: 547 GIAWLYVDNDCC 558


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +2

Query: 59  RIASVVMECCV*TGVHWT 112
           R+  V M+C      HWT
Sbjct: 179 RLLGVAMDCLKGNAKHWT 196


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 257 KALIAFYQKYVDEASKKEIKDI 322
           K +IAFY K +   +  EIK I
Sbjct: 128 KPIIAFYYKPIKTLNGHEIKFI 149


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,540
Number of Sequences: 336
Number of extensions: 2776
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12678017
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)