Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20150
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...    95   6e-21
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...    95   6e-21
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    30   0.24 
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    26   4.0  
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr...    25   6.9  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   6.9  
SPAC29E6.05c ||SPAC30.09c|peptide methionine sulfoxide reductase...    25   9.1  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    25   9.1  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    25   9.1  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 95.1 bits (226), Expect = 6e-21
 Identities = 43/58 (74%), Positives = 50/58 (86%)
 Frame = +2

Query: 254 SKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 427
           SKA++A+YQK+VDE SK E+K  L+ YDR+LLVADPRR EPKKFGG GARAR QKSYR
Sbjct: 83  SKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140



 Score = 91.5 bits (217), Expect = 7e-20
 Identities = 41/70 (58%), Positives = 55/70 (78%)
 Frame = +1

Query: 10  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 189
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 190 DIRVTVKGGG 219
           DIRV V GGG
Sbjct: 61  DIRVRVSGGG 70



 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 210 GWWHVAQVYAIRQAIQR 260
           G  HV+Q+YAIRQAI +
Sbjct: 68  GGGHVSQIYAIRQAISK 84


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score = 95.1 bits (226), Expect = 6e-21
 Identities = 43/58 (74%), Positives = 50/58 (86%)
 Frame = +2

Query: 254 SKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 427
           SKA++A+YQK+VDE SK E+K  L+ YDR+LLVADPRR EPKKFGG GARAR QKSYR
Sbjct: 83  SKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140



 Score = 91.5 bits (217), Expect = 7e-20
 Identities = 41/70 (58%), Positives = 55/70 (78%)
 Frame = +1

Query: 10  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 189
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 190 DIRVTVKGGG 219
           DIRV V GGG
Sbjct: 61  DIRVRVSGGG 70



 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 210 GWWHVAQVYAIRQAIQR 260
           G  HV+Q+YAIRQAI +
Sbjct: 68  GGGHVSQIYAIRQAISK 84


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +1

Query: 31  GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 210
           G++K++ A      G G   VNG P D+   R++  K      L    + +  ++  TV 
Sbjct: 12  GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70

Query: 211 GGG 219
           GGG
Sbjct: 71  GGG 73


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
            Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 150  TYPFARQGKILYGRHQSDSQGWWH 221
            T  F+R GKI++   +S   G WH
Sbjct: 984  TISFSRSGKIIFKSTRSKLHGIWH 1007


>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 431

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +2

Query: 113 WLSPDCCSTNFRNLSFCSARKNSLWSTSE*QSRVVACSTSLRYPTSYSKA 262
           W S D  S N    S  S  K S W+  E +  + +    +  P S +KA
Sbjct: 342 WSSSDMASLNDSLYSHPSVSKQSTWTEEELKEELESFGELVPVPFSSTKA 391


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 97   RLHAAFHDHACNTQLRWRFS 38
            RLH+ F++H C + L+  FS
Sbjct: 1062 RLHSLFNEHFCKSNLQLFFS 1081


>SPAC29E6.05c ||SPAC30.09c|peptide methionine sulfoxide reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 170

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +2

Query: 245 TSYSKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 367
           TSY K +  F+  +    S ++  DI  QY  ++   +P +
Sbjct: 68  TSYDKIIEFFFAMHDPTTSNQQGNDIGTQYRSAIFTTNPEQ 108


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 136 TAAVWAQPSPMDARLHAAFHDHACNTQLR 50
           T +V  +  P  AR  AA H +A +TQLR
Sbjct: 375 TPSVKPEMFPKTARPFAAIHANASSTQLR 403


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 408 DTRNLTVKPSRKPSGGIVAASCCH 479
           D  N+ VKP+  P+  +    CCH
Sbjct: 566 DRFNVIVKPALNPAERMTVRICCH 589


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,342,206
Number of Sequences: 5004
Number of extensions: 46149
Number of successful extensions: 150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)