Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20150
(525 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 109 1e-24
11_01_0155 - 1287003-1287452 109 1e-24
03_06_0097 - 31632238-31632525,31633386-31633769 31 0.57
07_03_0227 - 15398371-15398925 29 1.7
05_05_0126 + 22574191-22575567 29 1.7
07_01_0764 + 5860571-5860780,5860865-5860996,5861082-5861252,586... 29 2.3
02_02_0082 + 6615408-6615606,6615736-6615866,6615957-6616072,661... 24 2.7
01_05_0500 + 22752190-22752329,22752957-22753032,22753292-227533... 28 4.0
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986... 28 5.3
03_02_0334 + 7570568-7570709,7571622-7571844,7572178-7572257,757... 28 5.3
10_05_0043 + 8503979-8504407,8506484-8506624,8506865-8506975,850... 27 9.2
08_02_0526 + 18184146-18184168,18184247-18184438,18184846-181849... 27 9.2
01_06_0683 - 31173763-31174635,31175146-31175436 27 9.2
>12_01_0152 - 1168928-1169377
Length = 149
Score = 109 bits (263), Expect = 1e-24
Identities = 48/58 (82%), Positives = 55/58 (94%)
Frame = +2
Query: 254 SKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 427
+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 92 AKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149
Score = 89.4 bits (212), Expect = 2e-18
Identities = 37/67 (55%), Positives = 52/67 (77%)
Frame = +1
Query: 19 VQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIR 198
VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F +D+R
Sbjct: 13 VQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMR 72
Query: 199 VTVKGGG 219
+ V+GGG
Sbjct: 73 IRVRGGG 79
>11_01_0155 - 1287003-1287452
Length = 149
Score = 109 bits (263), Expect = 1e-24
Identities = 48/58 (82%), Positives = 55/58 (94%)
Frame = +2
Query: 254 SKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 427
+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 92 AKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149
Score = 89.4 bits (212), Expect = 2e-18
Identities = 37/67 (55%), Positives = 52/67 (77%)
Frame = +1
Query: 19 VQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIR 198
VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F +D+R
Sbjct: 13 VQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMR 72
Query: 199 VTVKGGG 219
+ V+GGG
Sbjct: 73 IRVRGGG 79
>03_06_0097 - 31632238-31632525,31633386-31633769
Length = 223
Score = 31.1 bits (67), Expect = 0.57
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +1
Query: 13 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLV---EPRLLQYKLQEPILLLGKEKFS 183
Q + GR+KTA A + G G + +N R P ++Y + P++ LG E +
Sbjct: 96 QRITATGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFE--N 152
Query: 184 MVDIRVTVKGGGM 222
D+ V V GGG+
Sbjct: 153 SYDVFVKVHGGGL 165
>07_03_0227 - 15398371-15398925
Length = 184
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -3
Query: 151 VPEVCTAAVWAQPSPMDARLHAAFH--DHACNTQLRWRF 41
+P +C A W P+ A H FH C+ + RW +
Sbjct: 23 LPPLCRAPWWPSPASSAAATHLRFHPRHRRCHPRRRWSY 61
>05_05_0126 + 22574191-22575567
Length = 458
Score = 29.5 bits (63), Expect = 1.7
Identities = 28/94 (29%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
Frame = +1
Query: 151 PILLLGKEKFSMVD-IRVTVKGGGM*HKFTLSDKLFKGSDRLLPEICRRSLKEGNQRHPS 327
P +L K FS +R+ + G G+ F D G L E +++ E R P
Sbjct: 39 PTILFEKFGFSKTGAVRIVITGAGISSTFARPDPKQLGFFLLSDESMFQAIYEAQARRPP 98
Query: 328 SIR*EFAGG*PASLRAQEVRWSRCPCQIPEILPL 429
R E AGG A E SRC P + L
Sbjct: 99 ERREEVAGG-----GADEPDVSRCILTSPYVKTL 127
>07_01_0764 +
5860571-5860780,5860865-5860996,5861082-5861252,
5861345-5861365,5861457-5861972,5862008-5862301
Length = 447
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 190 DIRVTVKGGGM*HKFTLSDKLFKGSDRLLPEIC 288
D+++TVKGGG K T + +K S ++P+ C
Sbjct: 409 DVKLTVKGGGGDAKSTCRNAKWKKSGTVVPQPC 441
>02_02_0082 +
6615408-6615606,6615736-6615866,6615957-6616072,
6617109-6617230,6617353-6617645,6617774-6617875,
6620437-6620865,6621026-6621775,6621915-6622109
Length = 778
Score = 23.8 bits (49), Expect(2) = 2.7
Identities = 10/21 (47%), Positives = 16/21 (76%), Gaps = 2/21 (9%)
Frame = +2
Query: 287 VDEASK--KEIKDILVQYDRS 343
+DE +K KE++D LV YD++
Sbjct: 291 IDEVAKLRKELQDTLVMYDKA 311
Score = 23.4 bits (48), Expect(2) = 2.7
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +2
Query: 95 TGVHWTWLSPDCCSTNFRNLSFCSARKNSLWSTSE*QSRVVACSTSLRYPTSYSKALIAF 274
TG+ +S + ++R+L F + +N + S QSRV C + +S S I F
Sbjct: 193 TGLRIQSVSQKAFAQSYRSLLFDNFPENGIHPDSCCQSRVSHCGPTNARQSSESHGQILF 252
>01_05_0500 +
22752190-22752329,22752957-22753032,22753292-22753351,
22754718-22754882,22756299-22756358
Length = 166
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 105 WTPVYTQHSMTTLAIRNCGGGFLTSEYLD 19
W V T H +T +A R+C G F ++LD
Sbjct: 18 WNYVVTAHKLTVVA-RSCVGNFTAPDHLD 45
>04_04_1154 -
31297628-31298020,31298150-31298300,31298389-31298620,
31298700-31298910,31299137-31299255,31299341-31299415,
31299991-31300189,31300258-31300664,31300775-31300839,
31300967-31301011,31301449-31301520,31301597-31301671,
31301912-31301983,31302178-31302249,31302525-31302596,
31302880-31302951,31303056-31303127,31304064-31304135,
31304375-31304561,31304686-31304815
Length = 930
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 94 NGRPLDLVEPRLLQYKLQEPILLL 165
NG PLD V+P+L ++ +E I ++
Sbjct: 807 NGHPLDFVDPKLSEFNSEEVIRVI 830
>03_02_0334 +
7570568-7570709,7571622-7571844,7572178-7572257,
7572869-7572929,7573670-7573796
Length = 210
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -3
Query: 115 PSPMDARLHAAFHDHACNTQLRWRFSYVRILGRPGS 8
PSP A+ AA A N LRWR +L R S
Sbjct: 7 PSPPPAQASAAEASGASNASLRWRILRRALLARSAS 42
>10_05_0043 +
8503979-8504407,8506484-8506624,8506865-8506975,
8507746-8508330
Length = 421
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -2
Query: 296 LRLHISGRRRSEPLNSLSDSVNLCYMPPPLTVTLMSTIENFS 171
LR+H +G++ + L L DS+ + PP T ++ N +
Sbjct: 293 LRIHKTGKKHKKNLERLQDSITPKPVKPPSTPNTVALAANMA 334
>08_02_0526 +
18184146-18184168,18184247-18184438,18184846-18184954,
18185071-18185220,18185973-18186136,18186273-18186359,
18187083-18187137,18187911-18188333
Length = 400
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 5 TRSRPSKYSDVRKPPPQLRIAS 70
+RS P K SD R PPP+ R S
Sbjct: 37 SRSPPPKKSDSRSPPPRRRSTS 58
>01_06_0683 - 31173763-31174635,31175146-31175436
Length = 387
Score = 27.1 bits (57), Expect = 9.2
Identities = 19/77 (24%), Positives = 30/77 (38%)
Frame = +2
Query: 11 SRPSKYSDVRKPPPQLRIASVVMECCV*TGVHWTWLSPDCCSTNFRNLSFCSARKNSLWS 190
S+P+K D PP Q +++SV VH +P + R C K W
Sbjct: 225 SKPAKKKDAPAPPAQAQLSSV--------PVHSGGSAPAAAAGEGRRCLHCETDKTPQWR 276
Query: 191 TSE*QSRVVACSTSLRY 241
T + + + +RY
Sbjct: 277 TGPMGPKTLCNACGVRY 293
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,553,672
Number of Sequences: 37544
Number of extensions: 348165
Number of successful extensions: 944
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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