Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20150
         (525 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...   109   1e-24
Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical pr...    31   0.50 
Z68341-1|CAA92764.1|  258|Caenorhabditis elegans Hypothetical pr...    28   4.7  
L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z78062-3|CAB01496.1| 1232|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score =  109 bits (262), Expect = 1e-24
 Identities = 46/70 (65%), Positives = 62/70 (88%)
 Frame = +1

Query: 10  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 189
           +Q+VQ FGRKKTATAVA+CK+G G+++VNGRPL+ +EP++L+ KLQEP+LL+GKE+F  V
Sbjct: 5   VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDV 64

Query: 190 DIRVTVKGGG 219
           DIR+ V GGG
Sbjct: 65  DIRIRVSGGG 74



 Score = 98.7 bits (235), Expect = 2e-21
 Identities = 44/58 (75%), Positives = 51/58 (87%)
 Frame = +2

Query: 254 SKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 427
           +KAL+A+Y KYVDE SK+E+K+I   YD+SLLVADPRR E KKFGGPGARARYQKSYR
Sbjct: 87  AKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRRRESKKFGGPGARARYQKSYR 144



 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 210 GWWHVAQVYAIRQAIQR 260
           G  HVAQ+YA+RQA+ +
Sbjct: 72  GGGHVAQIYAVRQALAK 88


>Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical
           protein BE10.4 protein.
          Length = 301

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 284 YVDEASKKEIKDILVQYDRSLLVADPRRCE 373
           + DE  +KE+ D+  QYDRS+ + D  R E
Sbjct: 151 FCDEVQQKEVGDLFHQYDRSIEIIDKVRHE 180


>Z68341-1|CAA92764.1|  258|Caenorhabditis elegans Hypothetical
           protein F01G4.2 protein.
          Length = 258

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 123 QTAAVQTSGTYPFARQGKILYGRHQSDSQG 212
           QT  V   GT+   R G  L G H+ D+ G
Sbjct: 113 QTIDVNVLGTFNVIRHGVALMGEHEKDANG 142


>L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical
           protein F09G8.3 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 344 LLVADPRRCEPKKFGGPGARARY 412
           LL  DPR+ E  K   PGARA++
Sbjct: 365 LLTLDPRKNERSKVNQPGARAKW 387


>Z78062-3|CAB01496.1| 1232|Caenorhabditis elegans Hypothetical protein
            F16D3.4 protein.
          Length = 1232

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/47 (25%), Positives = 27/47 (57%)
 Frame = +1

Query: 82   MLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGM 222
            ++ +   P+D +  R + ++L+ P+L LG E +  + + + V  GG+
Sbjct: 1004 LMNIYSEPMDFISDRTV-FQLK-PLLDLGSEYYEQLILGIVVSAGGL 1048


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,347,007
Number of Sequences: 27780
Number of extensions: 271232
Number of successful extensions: 647
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)