Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20150
(525 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C) 113 9e-26
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same... 113 9e-26
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi... 111 2e-25
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con... 33 0.089
At1g55960.1 68414.m06418 expressed protein weak similarity to SP... 29 2.5
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea... 28 4.4
At5g44580.1 68418.m05463 expressed protein 27 5.8
At4g11090.1 68417.m01801 expressed protein other hypothetical pr... 27 5.8
At5g25950.1 68418.m03085 hypothetical protein various predicted ... 27 7.7
At1g14470.1 68414.m01716 pentatricopeptide (PPR) repeat-containi... 27 7.7
>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
Length = 146
Score = 113 bits (271), Expect = 9e-26
Identities = 51/60 (85%), Positives = 57/60 (95%)
Frame = +2
Query: 248 SYSKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 427
S +KAL+A+YQKYVDE SKKEIKDILV+YDR+LLVADPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 87 SIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146
Score = 92.3 bits (219), Expect = 2e-19
Identities = 37/69 (53%), Positives = 57/69 (82%)
Frame = +1
Query: 13 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 192
++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EP+LLLGK +F+ V+
Sbjct: 8 ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67
Query: 193 IRVTVKGGG 219
+R+ V GGG
Sbjct: 68 MRIRVNGGG 76
>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
GB:Q42340
Length = 146
Score = 113 bits (271), Expect = 9e-26
Identities = 51/60 (85%), Positives = 57/60 (95%)
Frame = +2
Query: 248 SYSKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 427
S +KAL+A+YQKYVDE SKKEIKDILV+YDR+LLVADPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 87 SIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146
Score = 92.7 bits (220), Expect = 1e-19
Identities = 38/69 (55%), Positives = 57/69 (82%)
Frame = +1
Query: 13 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 192
++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EPILLLGK +F+ V+
Sbjct: 8 ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67
Query: 193 IRVTVKGGG 219
+R+ V GGG
Sbjct: 68 MRIRVNGGG 76
>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
thaliana]
Length = 146
Score = 111 bits (268), Expect = 2e-25
Identities = 50/60 (83%), Positives = 57/60 (95%)
Frame = +2
Query: 248 SYSKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 427
S +KAL+A+YQKYVDE SKKEIKDIL++YDR+LLVADPRRCE KKFGGPGARAR+QKSYR
Sbjct: 87 SIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRCESKKFGGPGARARFQKSYR 146
Score = 98.3 bits (234), Expect = 3e-21
Identities = 40/69 (57%), Positives = 57/69 (82%)
Frame = +1
Query: 13 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 192
++VQ FGRKKTATAV YCKRG GM+++NG P++L +P +L++K+ EP+LLLGK +F+ VD
Sbjct: 8 ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67
Query: 193 IRVTVKGGG 219
+R+ GGG
Sbjct: 68 MRIRATGGG 76
>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
contains Pfam profile PF00380: ribosomal protein S9
Length = 430
Score = 33.5 bits (73), Expect = 0.089
Identities = 20/63 (31%), Positives = 32/63 (50%)
Frame = +1
Query: 31 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 210
GR+K + A + + G G +VN + D+ P +L ++ L + DI+ TVK
Sbjct: 310 GRRKCSIARVWIQPGEGKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVK 368
Query: 211 GGG 219
GGG
Sbjct: 369 GGG 371
>At1g55960.1 68414.m06418 expressed protein weak similarity to
SP|P53808 Phosphatidylcholine transfer protein (PC-TP)
{Mus musculus}
Length = 403
Score = 28.7 bits (61), Expect = 2.5
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = +2
Query: 134 STNFRNLSFCSARKNSLWSTSE*QSRVVACSTSLRYPTSYSKALIAFYQKYVDEASKK-- 307
ST FR + + +S S+S + V ++ R S + F + ++E +
Sbjct: 44 STKFRFFTSAPSSSSSSSSSSSPSTESVPANSQSRISKLVSDEDLKFLIENLEEETNDST 103
Query: 308 EIKDILVQYDRSLLVADPRRCEPKKFGGP 394
EI + ++ + +RC+PK GGP
Sbjct: 104 EIWEHVIHKSNDRISYSAKRCKPKDGGGP 132
>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
family protein similar to CPY (GI:3096961) {Chironomus
thummi}; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
Length = 2471
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 206 SRVVACSTSLRYPTSYSKALIAFYQKYVDEASKKEIKDILVQYDRSLL 349
S VV+C R+ AL F+Q++ AS IL Y+R LL
Sbjct: 1559 SEVVSCEKFSRFQHKLQTALEQFHQRFSLSASYLRNMMILSAYNRGLL 1606
>At5g44580.1 68418.m05463 expressed protein
Length = 98
Score = 27.5 bits (58), Expect = 5.8
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = -1
Query: 519 LFIFLLYTTQ*YRNDNTTPRRYHPMVFLKA*R*DFWYLARAPGPPNFLGSQRRGSATSKL 340
L +FLL T R ++ P YH +FL R +++ A G P+ GS KL
Sbjct: 14 LIVFLLLCTFLSRTESALP--YHHELFLGRKRMNYYKPNSAIGTPSSTSDHAPGSNGRKL 71
Query: 339 LS 334
+S
Sbjct: 72 MS 73
>At4g11090.1 68417.m01801 expressed protein other hypothetical
proteins - Arabidopsis thaliana
Length = 432
Score = 27.5 bits (58), Expect = 5.8
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = +2
Query: 101 VHWTWLSPDCCSTNFRNLSFCSARKNSLWS 190
++W W DC F +L F +N W+
Sbjct: 121 LNWKWKPNDCSLPRFDSLRFLQLMRNKSWA 150
>At5g25950.1 68418.m03085 hypothetical protein various predicted
proteins, Arabidopsis thaliana contains Pfam profile
PF03080: Arabidopsis proteins of unknown function
Length = 413
Score = 27.1 bits (57), Expect = 7.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 65 QYATAVAVFLRPNTWTAWISC 3
QY V++FL PN+ W++C
Sbjct: 277 QYHITVSIFLDPNSGNWWLTC 297
>At1g14470.1 68414.m01716 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 540
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 176 NSLWSTSE*QSRVVACSTSLRYPTSYSKAL 265
NSL S SR+++C T LR P+ Y++ +
Sbjct: 33 NSLPRQSYWASRIISCCTRLRAPSYYTRLI 62
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,657,445
Number of Sequences: 28952
Number of extensions: 258124
Number of successful extensions: 714
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -