Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20149
         (567 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.70 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   3.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +2

Query: 14  STCPSLPSRM--VSSR*NPPPATPTWEVRTLTIAWSTTLSRSSRGNTKRTSLPT 169
           S+C  +P  +  + SR   PPA+ T    T+T   +TT + ++      T+  T
Sbjct: 77  SSCDPVPGNLEQIGSRPLHPPASSTSLPATITTTTTTTTTTTATAAATATTTAT 130


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -1

Query: 465 PLKKSCRSFCTLGYEWSHPPVQYRGFE 385
           P ++S  + C   + W H P  Y+  E
Sbjct: 458 PTEESVDALCNTLHHWHHCPEIYKAIE 484


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 91  HLPSGCRRRWISPRRYHP 38
           H P+G  + WI+  RY P
Sbjct: 794 HTPNGIVKTWIAHDRYLP 811


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 414 GSTRIPRCRSSCKISLM 464
           GSTR P  R+SC+  +M
Sbjct: 399 GSTRRPSRRNSCESQMM 415


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,135
Number of Sequences: 438
Number of extensions: 3979
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)