Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20148
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar...    31   0.20 
SPAC19B12.09 |srp14||signal recognition particle subunit Srp14|S...    28   1.4  
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    27   2.5  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    26   4.4  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    26   5.8  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    25   7.6  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    25   7.6  

>SPCC1223.02 |nmt1|thi3|no message in thiamine
           Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
 Frame = +1

Query: 109 CC*ILTMVLLSNDEFLA---ELTKLFQKARLAGSITM------TMKRYDGRSKPQPREEL 261
           CC   T++ +++DEF+A   +  K F +A  + ++ M      T K Y    K +   EL
Sbjct: 194 CCCFCTILYIAHDEFIAKHPDKIKAFLRAIHSATLDMLKDPVQTYKEYI-HFKREMGSEL 252

Query: 262 LQLKIPNTNAYYGHNLRVKRYQQLWNSVMSKSSQLHIL 375
            + +     AY+ H+  +    + WN V + S +L I+
Sbjct: 253 HREQFERCFAYFSHD--ISNVPRDWNKVTNYSKRLGII 288


>SPAC19B12.09 |srp14||signal recognition particle subunit
           Srp14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
 Frame = +1

Query: 130 VLLSNDEFLAELTKLFQ--KARLAGSITMTMK 219
           +LLSN+EFL +LT L Q  +++  GS+ ++ K
Sbjct: 1   MLLSNEEFLKKLTDLLQTHQSKGTGSVYLSQK 32


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 205 TMTMKRYDGRSKPQPREELLQLK 273
           T+ +K+    SKP+P+ ELL+L+
Sbjct: 49  TVAVKKLKNSSKPKPKHELLKLR 71


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 163 LTKLFQKARLAGSITMTMKRYDGRSKPQPREELLQLKIPNTNA 291
           LTKL +  R+ G I +T K   G+S     +E+ Q ++P +++
Sbjct: 46  LTKLDKDIRIQGWIRVTTKFLQGKSGSVKVQEIPQDQLPKSSS 88


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 356 VLNCIF*SAE-NEC*WFETLEKAQEKSNGDSV 448
           +L C F + + N+C WF  L  A   +NG SV
Sbjct: 480 LLKCTFSNLDGNDCSWFSYLPNAIVLANGTSV 511


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 175 KVSLTLLKTHRCSIKPLLKFNNNNWNLYVSSAVD 74
           K SLT  KT +  +KP  K  N+   +  SS  D
Sbjct: 84  KASLTETKTEKAKVKPKAKKKNSKEKISKSSKQD 117


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
 Frame = +1

Query: 217 KRYDGRS-KPQPREELL-----QLKIPNTNAYYGHNLRVKRYQ 327
           K Y GR+ K   REE L     Q+K+   N Y G NL +K  Q
Sbjct: 330 KLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQ 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,914
Number of Sequences: 5004
Number of extensions: 48763
Number of successful extensions: 145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)