Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20148
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.092
SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.6  
SB_32032| Best HMM Match : PAN (HMM E-Value=0.029)                     28   8.0  
SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_7401| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  

>SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3824

 Score = 34.3 bits (75), Expect = 0.092
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +1

Query: 124  TMVLLSNDEFLAELTKLFQKARLAGSITMTMKRYDGRSKPQPREELLQLKIPNTNAY 294
            T+  L ++     LTKL      A S T+ ++  DG S P+    +L+LK+ + N Y
Sbjct: 1031 TLFNLDSNTGALSLTKLIDYGNSARSYTLPVQAQDGGSPPRSSTAMLELKVVDVNDY 1087


>SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1218

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 76   PLHCLHINSNYCC*IL--TMVLLSNDEFLAELTKLF 177
            P+HCL+ N +Y C  +  +  LLSN  F  +  K+F
Sbjct: 994  PVHCLNANVSYSCRYVVDSRDLLSNHRFYFDRIKMF 1029


>SB_32032| Best HMM Match : PAN (HMM E-Value=0.029)
          Length = 610

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 89  KQCSGYYLLKFQHFRKLLLISKIC 18
           +QC+GYY+ KF+      L +K+C
Sbjct: 492 RQCNGYYVYKFEGLPPEYLDAKLC 515


>SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3296

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +1

Query: 253  EELLQLKIPNTNAYYGHNLRVKRYQQLWNSVMSKSSQL 366
            EEL ++K+ ++N+   H + V  + QLW  +  +  Q+
Sbjct: 2051 EELREVKLCHSNSKLAHKIWVDLFPQLWVMLSDRQQQV 2088


>SB_7401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 403

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -1

Query: 679 LLYKKCCTSGQ*LH*PYWQKQVRLQLFNLPW--RESTVQWTSSHTPGSHGGII 527
           LL KKC T  +     +W    RLQ F LPW   ++ V++T  +   +  GII
Sbjct: 53  LLVKKCQTLTKPFTPTFWASGNRLQTF-LPWILPQAEVEFTREYLQMADKGII 104


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,937,671
Number of Sequences: 59808
Number of extensions: 343469
Number of successful extensions: 861
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)