Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20148
         (679 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-2820|AAF55781.1|  142|Drosophila melanogaster CG5417-PA...    56   4e-08
BT001665-1|AAN71420.1|  120|Drosophila melanogaster RE48595p pro...    55   1e-07

>AE014297-2820|AAF55781.1|  142|Drosophila melanogaster CG5417-PA
           protein.
          Length = 142

 Score = 56.0 bits (129), Expect = 4e-08
 Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
 Frame = +3

Query: 255 GTPAVKNPE-YKCLLRAQSKSKKISTVVEQRDVEKFSTAYSNLLKTSVNGXXXXXXXXXX 431
           G P +  PE Y CL+RAQSKS+KISTVV Q DV    + YS  +K+ ++G          
Sbjct: 77  GRPPLPKPETYMCLMRAQSKSQKISTVVRQEDVPAMMSMYSQFMKSKMDGLKRVKKVKSK 136

Query: 432 AMATQ 446
           A AT+
Sbjct: 137 AKATK 141



 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 28/63 (44%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +1

Query: 100 SNYCC*IL-TMVLLSNDEFLAELTKLFQKARLAGSITMTMKRYDGRSKPQPREELLQLKI 276
           S + C I   MVLL N  F+  L K+   A+   S T+T KRYDG  KP PRE    L  
Sbjct: 24  SRFSCFICHEMVLLDNSNFILRLEKIANAAKKDSSFTLTFKRYDGNDKPVPREGRPPLPK 83

Query: 277 PNT 285
           P T
Sbjct: 84  PET 86


>BT001665-1|AAN71420.1|  120|Drosophila melanogaster RE48595p
           protein.
          Length = 120

 Score = 54.8 bits (126), Expect = 1e-07
 Identities = 26/50 (52%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
 Frame = +3

Query: 255 GTPAVKNPE-YKCLLRAQSKSKKISTVVEQRDVEKFSTAYSNLLKTSVNG 401
           G P +  PE Y CL+RAQSKS+KISTVV Q DV    + YS  +K+ ++G
Sbjct: 55  GRPPLPKPETYMCLMRAQSKSQKISTVVRQEDVPAMMSMYSQFMKSKMDG 104



 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 28/63 (44%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +1

Query: 100 SNYCC*IL-TMVLLSNDEFLAELTKLFQKARLAGSITMTMKRYDGRSKPQPREELLQLKI 276
           S + C I   MVLL N  F+  L K+   A+   S T+T KRYDG  KP PRE    L  
Sbjct: 2   SRFSCFICHEMVLLDNSNFILRLEKIANAAKKDSSFTLTFKRYDGNDKPVPREGRPPLPK 61

Query: 277 PNT 285
           P T
Sbjct: 62  PET 64


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,960,832
Number of Sequences: 53049
Number of extensions: 502228
Number of successful extensions: 1406
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2951284050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)