Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20148
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    25   0.66 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    25   0.66 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.2  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 610 LQLFNLPWRESTVQWTSSHT 551
           L+  NL +  S++QW+S+HT
Sbjct: 482 LERLNLIFMSSSLQWSSTHT 501


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 610 LQLFNLPWRESTVQWTSSHT 551
           L+  NL +  S++QW+S+HT
Sbjct: 520 LERLNLIFMSSSLQWSSTHT 539


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 609 SNSSISLGEKAQFNGPHPTRQD 544
           S+SSIS  E+  F  P PT +D
Sbjct: 374 SSSSISSSEENDFWQPKPTLED 395


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/35 (20%), Positives = 19/35 (54%)
 Frame = +1

Query: 268 LKIPNTNAYYGHNLRVKRYQQLWNSVMSKSSQLHI 372
           +++PN   +Y  +L +  +  +  S++    +LH+
Sbjct: 301 IQMPNLMVFYEKSLALAAFSLMLTSILRYLQELHV 335


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 419 LFQAFQTINTRFQQIRI 369
           LF  F  ++ RF+Q+RI
Sbjct: 301 LFARFDQLSERFEQLRI 317


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,223
Number of Sequences: 438
Number of extensions: 3697
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)