Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20146
(634 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 60 3e-10
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 29 0.56
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo... 29 0.56
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p... 28 0.97
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 28 1.3
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ... 27 3.0
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 3.9
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 26 5.2
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 5.2
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 26 5.2
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 25 6.9
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 60.1 bits (139), Expect = 3e-10
Identities = 31/83 (37%), Positives = 48/83 (57%)
Frame = +2
Query: 254 ATFHPELVLASYYNSDDAPHDPDGVCLVWNTKFKKTTPEDIFHCQSAVMSATFARFHPNL 433
++F EL++ SY +A G+ +VWN ++K + PE + +S + + FHP L
Sbjct: 201 SSFFEELLITSYAKPKEALRTR-GLAIVWNQRWKNS-PESVLKARSEITVCKPSPFHPQL 258
Query: 434 ILGGTYSGQIVLWDNRVQKRTPV 502
I GG Y+GQ+ LWD R Q + PV
Sbjct: 259 IAGGAYNGQVFLWDLR-QGQYPV 280
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 29.1 bits (62), Expect = 0.56
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +2
Query: 317 PDGVCLVWNTKFKKTTPEDIFHCQSAVMSATFARFHPNLILGGTYSGQIVLWDNRVQKRT 496
P G VW+ + + H + AV + FHP+ +L + G I LWD + T
Sbjct: 112 PLGNLNVWDVNLEALLYDFNEHSR-AVHKLDISSFHPSYVLTASQDGLIKLWDYKESSST 170
>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 29.1 bits (62), Expect = 0.56
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 260 FHPELVLASYYNSDDAPHDPDGVCLVWNTK 349
FH +L +YY D A +PD VCLV NT+
Sbjct: 217 FHGDLN-ETYYVGDKAKANPDLVCLVENTR 245
>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 571
Score = 28.3 bits (60), Expect = 0.97
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 502 AAPPLSSVAHTHPVYCLSVIG 564
A+PP SS++HT P+ L+ IG
Sbjct: 504 ASPPFSSLSHTLPISALAKIG 524
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 441 EARIRDR-SCCGIIACKSEPRCSAAAVLGRAHSP 539
E ++D+ + C CKSE RCSAA+ P
Sbjct: 367 ETNLKDKYALCSTKCCKSEYRCSAASFWVECEQP 400
>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 512
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -3
Query: 155 LSVTP-ARVVGVDVDGLGERAFD 90
L V+P A +GVD D +GE AFD
Sbjct: 436 LRVSPDAEEIGVDADQIGEYAFD 458
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = +2
Query: 350 FKKTTPEDIFHCQSAVMSATFARFHPNLILGGTYSGQIVLWDNRVQKRTPVQ 505
+ + + E+I C A H NL + G G I +W+ R+Q ++
Sbjct: 2426 YNENSDENIL-CSCFYTGANSEWLHKNLFITGHPDGIIRIWEKRLQSNAKLE 2476
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 25.8 bits (54), Expect = 5.2
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -2
Query: 498 GVRFCTRLSHSTICPEYVPPRIKLGWNLANVALITA-D*QWNMSSGV 361
G F T + STI ++ PP + L N ++ D QW SS +
Sbjct: 315 GKHFNTHIIDSTIPDDFHPPAVVLSSNPKDIVFYKGIDIQWARSSEI 361
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +2
Query: 410 FARFHPNLILGGTYSGQIVLWD 475
F R PNL+ G G + +WD
Sbjct: 125 FNRLQPNLLASGDNKGDVWVWD 146
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 460 LSRIRASEDQVRVEPRKRGAHNRRLT 383
L+R++ E+Q R+ R R ++N+R T
Sbjct: 63 LARLQREEEQSRILSRSRSSNNKRRT 88
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 25.4 bits (53), Expect = 6.9
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 463 DLSRIRASEDQVRVEPRK 410
D SRI+AS D+ + EPR+
Sbjct: 166 DFSRIKASPDRKKFEPRR 183
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,430,751
Number of Sequences: 5004
Number of extensions: 49124
Number of successful extensions: 172
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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