Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20146
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0802 - 27823213-27823701,27823911-27823959,27824053-278241... 33 0.19
12_01_0748 - 6728221-6728305,6728788-6728842,6729202-6729289,672... 29 2.3
04_04_0786 - 28052981-28053040,28053123-28053222,28053447-280535... 29 2.3
10_01_0025 - 328105-328188,328281-328337,328680-328734,328809-32... 29 4.1
03_05_0346 + 23335753-23335854,23336268-23336473,23336530-233367... 29 4.1
01_01_0727 - 5675215-5675277,5675523-5675621,5676645-5676782,567... 29 4.1
02_05_0960 + 33097510-33097821,33098846-33099043,33099174-330994... 28 7.1
05_01_0146 - 953957-956278,956468-956786,957185-957213 27 9.4
01_01_0248 + 2041015-2041762,2042112-2042149 27 9.4
>03_05_0802 -
27823213-27823701,27823911-27823959,27824053-27824120,
27824208-27824276,27824391-27824460,27824556-27824635,
27824706-27824784,27824949-27825025,27825110-27825176,
27825285-27825381,27825478-27825574,27825701-27825739,
27825843-27825907,27826034-27826142,27826275-27826487
Length = 555
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +2
Query: 320 DGVCLVWNTKFKKTTPEDIFHCQSAVMSATFARFHPNLILGGTYSGQIVLWDNRVQKRTP 499
D +W+ + KK H S V S + +P LI+ G+ G LWD R+ +TP
Sbjct: 140 DQTVKIWSVENKKCLGVLSGHTGS-VKSLSCHSSNPELIVTGSRDGSFALWDLRIDPKTP 198
>12_01_0748 -
6728221-6728305,6728788-6728842,6729202-6729289,
6729681-6729818,6729978-6730142,6730235-6730354,
6730555-6730631,6730738-6731113,6731523-6732617
Length = 732
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Frame = -3
Query: 341 SRPGTLRQGRAARRHCCSKRPAPVPGETWPVQTG--HAPSARPAFLLEGTNQGKTGR*LV 168
SR L QG+ R H S P V GE W G F+L T++ TG
Sbjct: 615 SRAHRLAQGKVIRLHLHSSFPVQVDGEPWIQPPGCLEISHRGQMFMLRRTSEEPTGHAAA 674
Query: 167 VKS 159
+ S
Sbjct: 675 IMS 677
>04_04_0786 -
28052981-28053040,28053123-28053222,28053447-28053574,
28053654-28053821,28053901-28054013,28054135-28054287,
28054385-28054528,28054794-28055529
Length = 533
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 619 PGTERRPSIPRSGYGRSGFLSPTGSTPGECARPRTAA 509
PGT RRPS PR +G PTGS+ A R A+
Sbjct: 36 PGTWRRPSFPR--HGAPPHRPPTGSSSAAGALSRRAS 70
>10_01_0025 -
328105-328188,328281-328337,328680-328734,328809-328951,
330772-330909,331010-331120,332621-332684,334179-334378,
334678-334805,335468-335593,335828-335917,336035-336116,
336845-336910
Length = 447
Score = 28.7 bits (61), Expect = 4.1
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Frame = +2
Query: 227 RTVRDLSGLATFHPELVLASYYNSDD---APHDPDGVCLVWNTKFKKTTPEDIFHCQSAV 397
R V S H E VLA ++ D A D W+ +T +F C+
Sbjct: 69 RPVNRCSATIAGHTEAVLAVSFSPDGRCLASGSGDTTVRFWDL----STQTPLFTCKGHK 124
Query: 398 MSATFARFHP--NLILGGTYSGQIVLWDNRVQKR 493
+ P N ++ G+ SG+++LWD + K+
Sbjct: 125 NWVLCIAWSPDGNHLVSGSKSGELILWDPKTGKQ 158
>03_05_0346 +
23335753-23335854,23336268-23336473,23336530-23336705,
23336832-23337064,23337546-23337963,23338045-23338262,
23338905-23339168
Length = 538
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 245 SGLATFHPELVLASYYNSDDAPHDPDGVCLVWNTKFKKTTPE 370
S + + H LV+A +Y PH + L W+ K +K P+
Sbjct: 230 SNVNSHHASLVIAKHYACAYFPHTSQTITLKWHGKNRKWHPK 271
>01_01_0727 -
5675215-5675277,5675523-5675621,5676645-5676782,
5676878-5676995,5678177-5678520
Length = 253
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = -3
Query: 341 SRPGTLRQGRAARRHCCSKRPAPVPGETWPVQTGHAPSARP 219
+RPGTL A R + P P PG+ P Q P ARP
Sbjct: 18 ARPGTLSSLFAPRSSPKPRAPRPEPGD-GPPQERRKPRARP 57
>02_05_0960 +
33097510-33097821,33098846-33099043,33099174-33099446,
33099575-33099677,33100297-33100415,33100968-33101759
Length = 598
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 502 AAPPLSSVAHTHPVYCLSVIG 564
AAP L+ HTHP Y + ++G
Sbjct: 244 AAPCLAQALHTHPDYKIKIVG 264
>05_01_0146 - 953957-956278,956468-956786,957185-957213
Length = 889
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -1
Query: 601 PSIPRSGYGRSGFLSPTGSTPGECARPRTAAALHRGS 491
PS RSG S STP RP T +++HR S
Sbjct: 6 PSKSRSGPNESPISRGRPSTPSSNHRPSTPSSIHRPS 42
>01_01_0248 + 2041015-2041762,2042112-2042149
Length = 261
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 619 PGTERRPSIPRSGYGRSGFLSPTGSTPGECA 527
P +E R + +G+ R GFL + PG+CA
Sbjct: 187 PWSELRSAGDYAGFVRRGFLLEWAAVPGDCA 217
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,128,647
Number of Sequences: 37544
Number of extensions: 432295
Number of successful extensions: 1567
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1566
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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