Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20146
(634 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20706| Best HMM Match : No HMM Matches (HMM E-Value=.) 152 3e-37
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.78
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_48293| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_6855| Best HMM Match : MSF1 (HMM E-Value=1.6e-10) 30 1.8
SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_9428| Best HMM Match : Vicilin_N (HMM E-Value=4.2) 28 7.2
SB_21036| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_20706| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 588
Score = 152 bits (368), Expect = 3e-37
Identities = 65/81 (80%), Positives = 74/81 (91%)
Frame = +2
Query: 263 HPELVLASYYNSDDAPHDPDGVCLVWNTKFKKTTPEDIFHCQSAVMSATFARFHPNLILG 442
+PEL++ASY N++DAPH+PDGV L+WN KF KTTPE IFHCQSAVMSATFA+FHPNLI+G
Sbjct: 255 YPELLVASYNNNEDAPHEPDGVALIWNLKFAKTTPEYIFHCQSAVMSATFAKFHPNLIIG 314
Query: 443 GTYSGQIVLWDNRVQKRTPVQ 505
GTYSGQIVLWDNR KRTPVQ
Sbjct: 315 GTYSGQIVLWDNRSSKRTPVQ 335
Score = 72.1 bits (169), Expect = 3e-13
Identities = 36/81 (44%), Positives = 48/81 (59%)
Frame = +3
Query: 12 ELSADEKQTIMLSAEFQRFMSRAGRVIERALAESVDIXXXXXXXXXXENALDDKSAARLS 191
ELS ++K I+ S EF RF +A R++ERAL E +DI + ++A L+
Sbjct: 171 ELSEEQKDQILGSQEFSRFFDKAVRLVERALTEDLDITIDYSGAEGDDLEGGSQAARELT 230
Query: 192 LVRTFEEERWSRGRCVTCLDW 254
L R F +ERWSR R VTCLDW
Sbjct: 231 LSRDFYDERWSRHRTVTCLDW 251
Score = 68.1 bits (159), Expect = 6e-12
Identities = 32/51 (62%), Positives = 39/51 (76%), Gaps = 1/51 (1%)
Frame = +1
Query: 484 AKANPGAAPPLSSVAHTHPVYCLSVIGSQNAHNLISVSTDGAL-FLVLDML 633
+K P PLS+ AHTHPVYC++V+G+QNAHNLISVSTDG + LDML
Sbjct: 329 SKRTPVQRTPLSATAHTHPVYCVNVVGTQNAHNLISVSTDGKMCSWSLDML 379
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 31.1 bits (67), Expect = 0.78
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +2
Query: 314 DPDGVCLVWNTKFKKTTPEDIFHCQSAVMSATFARFHPNLILGGTYS 454
DPDGV +V TK + FH VMS T ILG Y+
Sbjct: 337 DPDGVLMVHTTKQYPSQDATAFHVFGRVMSGTLYAGQQVRILGENYT 383
>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 30.3 bits (65), Expect = 1.4
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Frame = +2
Query: 260 FHPELVLASYYNSDDAPHD-------PDGVCLVWNT-KFKKTTPEDIFHCQS-----AVM 400
FH +LV + + S+D+P + +G +++N K K +++ Q+ AV
Sbjct: 69 FH-KLVWSPFGMSEDSPSNGLIIGGTDNGEIVIYNANKILKGQKDNLIFAQTNKHSGAVQ 127
Query: 401 SATFARFHPNLILGGTYSGQIVLWD 475
+ F F PNL+ G +I +WD
Sbjct: 128 ALDFNPFQPNLLASGASDSEIFIWD 152
>SB_48293| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1135
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/67 (23%), Positives = 27/67 (40%)
Frame = -1
Query: 619 PGTERRPSIPRSGYGRSGFLSPTGSTPGECARPRTAAALHRGSLLHAIIPQHDLSRIRAS 440
PG E RP S PG R A ++ RG + + P++DL+ +
Sbjct: 779 PGYEWRPEAAWGPKSGRNLCKDVSSRPGRIGEDRWAVSMFRGRSVVVLTPENDLAHDHRN 838
Query: 439 EDQVRVE 419
++ V+
Sbjct: 839 NPRLAVK 845
>SB_6855| Best HMM Match : MSF1 (HMM E-Value=1.6e-10)
Length = 289
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 261 NVASPDRSRTVRATSVPPRRYEPGKDGPLTCR 166
N +P R+R ++ T PP GK P+ CR
Sbjct: 195 NHTAPARARPIQTTCKPPAHLSTGKGIPILCR 226
>SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 931
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -1
Query: 262 KRGQSRQVT---HRPRDQRSSSKVRTRERRAADLSSR 161
KRG S +T H RD RS + R RERR D SSR
Sbjct: 811 KRGSSTILTRERHSDRD-RSPRRERDRERRERDSSSR 846
>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4247
Score = 27.9 bits (59), Expect = 7.2
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Frame = -3
Query: 275 PVPGETWPV--QTGHAPSARPAFLLEGTNQGKTGR*LVVKSVL--SVTPARVVGVDVDGL 108
P P + WP Q + + P L E N T V S + S PA V+ +G
Sbjct: 523 PAPIQAWPKTEQNKASETILPTLLNEQWNSHTTELVDAVISGMERSQAPAPVIVESAEGE 582
Query: 107 GERAFDDSSGATHEPLELGRQ 45
G + G EP + GR+
Sbjct: 583 GHYVEESREGVVEEPSDSGRE 603
>SB_9428| Best HMM Match : Vicilin_N (HMM E-Value=4.2)
Length = 122
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = -3
Query: 530 CATEDSGGAAPGFAFARDYPTARSVPNTCLRGSS*GGTSQTWRS*P 393
CA PGF+ +R T S CL+ S G QT R P
Sbjct: 25 CAARRLSWVTPGFSQSRRCKTTASAKLACLQVDSRGSPRQTGRMRP 70
>SB_21036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 243
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 242 LSGLATFHPELVLASYYNSDDAPHDPD 322
L L++ HP +V SY + D H PD
Sbjct: 27 LEALSSGHPSVVYRSYQDHPDQSHTPD 53
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,972,122
Number of Sequences: 59808
Number of extensions: 442927
Number of successful extensions: 1681
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1678
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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