Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20146
(634 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF045642-2|AAC02580.1| 643|Caenorhabditis elegans Dynein chain,... 87 1e-17
Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical pr... 31 0.91
Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical pr... 31 0.91
Z54235-2|CAA90972.2| 371|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z81523-5|CAB04240.2| 298|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 29 2.1
U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical pr... 29 3.7
U51993-3|AAB36853.2| 958|Caenorhabditis elegans Hypothetical pr... 28 6.4
>AF045642-2|AAC02580.1| 643|Caenorhabditis elegans Dynein chain,
light intermediateprotein 1 protein.
Length = 643
Score = 87.0 bits (206), Expect = 1e-17
Identities = 39/77 (50%), Positives = 52/77 (67%)
Frame = +2
Query: 263 HPELVLASYYNSDDAPHDPDGVCLVWNTKFKKTTPEDIFHCQSAVMSATFARFHPNLILG 442
+P+L+ SY D P++P GV +VWNTK K+ T E I +CQS + S FARFH +L+L
Sbjct: 295 YPDLLAVSY-GPCDIPNEPPGVIVVWNTKSKRMTAEFIVYCQSEIQSVAFARFHAHLLLA 353
Query: 443 GTYSGQIVLWDNRVQKR 493
G SGQI +WDNR+ R
Sbjct: 354 GCESGQICVWDNRLTSR 370
Score = 47.6 bits (108), Expect = 7e-06
Identities = 18/34 (52%), Positives = 28/34 (82%)
Frame = +1
Query: 511 PLSSVAHTHPVYCLSVIGSQNAHNLISVSTDGAL 612
PL++ AHT+ V CL+V+G++NAHN +S+S DG +
Sbjct: 378 PLTTQAHTYTVSCLAVVGTKNAHNFVSLSRDGRI 411
Score = 37.9 bits (84), Expect = 0.006
Identities = 26/76 (34%), Positives = 38/76 (50%)
Frame = +3
Query: 15 LSADEKQTIMLSAEFQRFMSRAGRVIERALAESVDIXXXXXXXXXXENALDDKSAARLSL 194
LS +EK + L EF +R+ +VI RAL E +DI E A+ S L L
Sbjct: 215 LSDEEKYRLTLDPEFLDSFNRSCKVISRALNEEIDI-CINYTKDPYEKAI--ASDDLLHL 271
Query: 195 VRTFEEERWSRGRCVT 242
+ +++E W+ R VT
Sbjct: 272 AQVYQDETWTAKRLVT 287
>Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical
protein T01G1.3 protein.
Length = 1083
Score = 30.7 bits (66), Expect = 0.91
Identities = 10/51 (19%), Positives = 25/51 (49%)
Frame = +2
Query: 338 WNTKFKKTTPEDIFHCQSAVMSATFARFHPNLILGGTYSGQIVLWDNRVQK 490
W+++F T ++ H + S + + L++ GQ+V+W++ +
Sbjct: 240 WDSRFTSTPVKEYRHHNMGITSVDWNKADDRLVISSGCDGQVVIWNHETSE 290
>Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical
protein T01G1.3 protein.
Length = 1083
Score = 30.7 bits (66), Expect = 0.91
Identities = 10/51 (19%), Positives = 25/51 (49%)
Frame = +2
Query: 338 WNTKFKKTTPEDIFHCQSAVMSATFARFHPNLILGGTYSGQIVLWDNRVQK 490
W+++F T ++ H + S + + L++ GQ+V+W++ +
Sbjct: 240 WDSRFTSTPVKEYRHHNMGITSVDWNKADDRLVISSGCDGQVVIWNHETSE 290
>Z54235-2|CAA90972.2| 371|Caenorhabditis elegans Hypothetical
protein C09G9.2 protein.
Length = 371
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 365 PEDIFHCQSAVMSATFARFHPNLILGGTYSGQIVLWDNR 481
P IF Q+ + S F N+++ G +GQI +WD R
Sbjct: 161 PRTIFTGQAGIRSVC-TTFGTNVVMAGDANGQITMWDLR 198
>Z81523-5|CAB04240.2| 298|Caenorhabditis elegans Hypothetical
protein F32H2.4 protein.
Length = 298
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 445 HVFGTDRAVG*SRAKANPGAAPPLSSV-AHTHPVYCLSVIGSQNAHNLISVSTDGALFL 618
HVF + K GA P++S+ AH+H V CL+V S++ L ++D + L
Sbjct: 144 HVFVAESGGKVEILKFAGGALEPVTSIQAHSHQVECLAVSISKDGRKLAVGASDASCSL 202
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 625 PGPGTERRPSIPRSGYGRSGFLSPTGSTPGECARP 521
PGPG + P+ P GR+G P +PGE RP
Sbjct: 182 PGPGGKPGPAGPPGENGRNG--EPQPGSPGEPGRP 214
>U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical
protein C10H11.8 protein.
Length = 382
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Frame = +2
Query: 320 DGVCLVWNTKFKKTTPEDIFHCQSAVMSATFARFHPNLILGGTYSGQIVLWD--NRVQKR 493
DGVC +W + + + + +++ H + T S + +WD N + R
Sbjct: 143 DGVCRIWEMRNNQLVANRLLSFPGSTVTSIVPNTHQTHLFVSTNSAHVWVWDVVNHIFMR 202
Query: 494 TPV 502
P+
Sbjct: 203 LPM 205
>U51993-3|AAB36853.2| 958|Caenorhabditis elegans Hypothetical
protein F56F10.4 protein.
Length = 958
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 218 LVARTVRDLSGLATFHPELVLASYYNSDDAPHDP 319
LV RT + G ++F E ++YYNSD+ P P
Sbjct: 483 LVIRTSLEFDGASSFDNED--SNYYNSDEKPEKP 514
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,008,338
Number of Sequences: 27780
Number of extensions: 306625
Number of successful extensions: 941
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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