Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20144
         (716 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7SEK1 Cluster: Predicted protein; n=3; Nematostella ve...    33   5.3  
UniRef50_A2E6U0 Cluster: Putative uncharacterized protein; n=1; ...    33   7.0  

>UniRef50_A7SEK1 Cluster: Predicted protein; n=3; Nematostella
            vectensis|Rep: Predicted protein - Nematostella vectensis
          Length = 2623

 Score = 33.5 bits (73), Expect = 5.3
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
 Frame = +3

Query: 414  IHTEKEVSLHL--LGPGCTR-SVLLFCFSPFLLDIEFSQ*FLAHYH*CHSQTRNGHVMLS 584
            I T+KE+ LHL   G G    +V  F +S  LLD+ F +  L +     S TRNG  ++ 
Sbjct: 2293 ILTDKELILHLTYFGFGVLGLTVHTFFYSVLLLDVIFREDTLLNV--IRSVTRNGRSIIL 2350

Query: 585  T*IMFYVYIYVF 620
            T I+  + +Y+F
Sbjct: 2351 TGILALIIVYMF 2362


>UniRef50_A2E6U0 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 647

 Score = 33.1 bits (72), Expect = 7.0
 Identities = 21/59 (35%), Positives = 28/59 (47%)
 Frame = +1

Query: 205 RKKGYKFFASRINI*ICSFCIYNLKYI*TFDNRRLIYNLNVEEVASLIHSISYYKSNLI 381
           R  GY+    + N     F   N+ Y+  FD    I + NVEE+  + H I   KSNLI
Sbjct: 30  RNAGYEVLERKYNY--AEFMEENINYVNAFDKLYKINSWNVEEIDGIFHDI---KSNLI 83


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 637,115,266
Number of Sequences: 1657284
Number of extensions: 12085474
Number of successful extensions: 28732
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 27108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28709
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)