Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20144
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81502-5|CAB04108.2|  672|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U28737-8|ABA61869.1|  537|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U28737-7|ABA61870.1|  501|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z81502-5|CAB04108.2|  672|Caenorhabditis elegans Hypothetical
           protein F14B6.5 protein.
          Length = 672

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 384 KMKNEENHNTIHTEKEVSLHLLGPGCTRSVLLFCFSPFLLDIEF 515
           K+  +E +NT   +K   LHL+      S++L C  P+ L+ +F
Sbjct: 231 KLIEDEENNTQKAQKPSILHLISYFPLISIILICIIPYQLNTDF 274


>U28737-8|ABA61869.1|  537|Caenorhabditis elegans Hypothetical
           protein F14B8.5a protein.
          Length = 537

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 581 VNMNNVLCIYICLFETYTIIYDCVLLIVSIVL*C 682
           VN+NNV   Y   F T+TI+  C+L I  +++ C
Sbjct: 370 VNVNNVGVAYA--FRTWTIVLGCLLGIALLLILC 401


>U28737-7|ABA61870.1|  501|Caenorhabditis elegans Hypothetical
           protein F14B8.5b protein.
          Length = 501

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 581 VNMNNVLCIYICLFETYTIIYDCVLLIVSIVL*C 682
           VN+NNV   Y   F T+TI+  C+L I  +++ C
Sbjct: 334 VNVNNVGVAYA--FRTWTIVLGCLLGIALLLILC 365


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,636,328
Number of Sequences: 27780
Number of extensions: 320673
Number of successful extensions: 852
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)