Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20144
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72320.3 68414.m08362 pumilio/Puf RNA-binding domain-containi...    28   5.4  
At1g72320.2 68414.m08361 pumilio/Puf RNA-binding domain-containi...    28   5.4  
At1g72320.1 68414.m08363 pumilio/Puf RNA-binding domain-containi...    28   5.4  

>At1g72320.3 68414.m08362 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile: PF00806 Pumilio-family
           RNA binding domains (aka PUM-HD, Pumilio homology
           domain) (5 copies)
          Length = 731

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 104 SFMHYFKKILALCTSSLYSL*VWKISYSSVSAIFVKRDTNFLLHVLI 244
           SF H  + IL +   SLY+    K+  +S+  + V R  NF++  LI
Sbjct: 336 SFSHLVEVILEVAPESLYNEMFNKVFKNSLFELSVDRCANFVIQALI 382


>At1g72320.2 68414.m08361 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile: PF00806 Pumilio-family
           RNA binding domains (aka PUM-HD, Pumilio homology
           domain) (5 copies)
          Length = 731

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 104 SFMHYFKKILALCTSSLYSL*VWKISYSSVSAIFVKRDTNFLLHVLI 244
           SF H  + IL +   SLY+    K+  +S+  + V R  NF++  LI
Sbjct: 336 SFSHLVEVILEVAPESLYNEMFNKVFKNSLFELSVDRCANFVIQALI 382


>At1g72320.1 68414.m08363 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile: PF00806 Pumilio-family
           RNA binding domains (aka PUM-HD, Pumilio homology
           domain) (5 copies)
          Length = 753

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 104 SFMHYFKKILALCTSSLYSL*VWKISYSSVSAIFVKRDTNFLLHVLI 244
           SF H  + IL +   SLY+    K+  +S+  + V R  NF++  LI
Sbjct: 358 SFSHLVEVILEVAPESLYNEMFNKVFKNSLFELSVDRCANFVIQALI 404


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,861,853
Number of Sequences: 28952
Number of extensions: 263096
Number of successful extensions: 487
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)