Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20143
         (780 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1434 - 33568258-33569415                                         29   4.1  
07_03_0635 + 20151861-20152249,20152589-20152709,20154914-201549...    29   5.5  
11_01_0541 + 4275660-4275766,4275856-4275973,4276160-4276386,427...    28   7.2  
07_03_0375 + 17408815-17409035,17422820-17423477,17423780-174241...    28   9.6  
01_06_1317 - 36251231-36251341,36252514-36252609,36252879-362529...    28   9.6  

>04_04_1434 - 33568258-33569415
          Length = 385

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 543 DMDFYIFNDIIY**TTRVVYYINTIIIPKHDHAVR 647
           +M FY FN I+Y    R +Y +NTI + +   A++
Sbjct: 132 EMPFYWFNFIVYDDADRRMYCVNTIFVVRLARAIQ 166


>07_03_0635 + 20151861-20152249,20152589-20152709,20154914-20154996,
            20155819-20155903,20155987-20156277,20156555-20156645,
            20157380-20158280,20158401-20158561,20158759-20158862,
            20159040-20159205,20159283-20159378,20159694-20159800,
            20160443-20160775,20161393-20161599,20161774-20161857,
            20162887-20163020,20163166-20163393,20163541-20163712,
            20164301-20164555,20164647-20164919
          Length = 1426

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -2

Query: 764  ECMA*SWRQAYNYWQDQPGSSL 699
            +C+A +W+Q  +YW+D P +++
Sbjct: 1150 QCVANTWKQFQSYWKDPPYNAM 1171


>11_01_0541 +
           4275660-4275766,4275856-4275973,4276160-4276386,
           4276505-4276729,4276902-4277052,4277139-4277345,
           4277442-4277520,4277605-4277723
          Length = 410

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 232 PKRCGRRKP*DICVTHATACSFG*F-ISNFRMKQSNG 339
           PKRCG +K  D  + +  + S G   I  F +  SNG
Sbjct: 106 PKRCGSQKQCDYVIQYVDSSSMGVLVIDRFSLSASNG 142


>07_03_0375 +
           17408815-17409035,17422820-17423477,17423780-17424161,
           17424236-17424550,17424727-17425118,17432479-17432508
          Length = 665

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/44 (25%), Positives = 26/44 (59%)
 Frame = +3

Query: 369 VILYVPCAILKFYSLKRIIIFHMVFLFKHYMF*RERFMRNLGGP 500
           +++++ C ++K  S+   +  H +F F+ YM   ++++RN   P
Sbjct: 585 IMMHLLCHLVKEISILGPVYLHNMFPFERYMGVLKKYVRNRARP 628


>01_06_1317 -
           36251231-36251341,36252514-36252609,36252879-36252956,
           36253037-36253138,36254509-36254784
          Length = 220

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 77  IYTLRRGGDFCDWTHKFFGPGNFKIFHMFIGFA 175
           I+ ++R    C W +   G  N+KIF +F+ +A
Sbjct: 86  IHEIKRKDHHCIWINNCVGHENYKIFLVFVLYA 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,080,387
Number of Sequences: 37544
Number of extensions: 282527
Number of successful extensions: 531
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)