Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20143
         (780 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)               38   0.007
SB_17017| Best HMM Match : TIL (HMM E-Value=4.8)                       33   0.20 
SB_35070| Best HMM Match : TIL (HMM E-Value=8.6)                       33   0.20 
SB_6589| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-36)                28   9.8  

>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 17/22 (77%), Positives = 19/22 (86%)
 Frame = +3

Query: 696 KKRAPWLILPVVICLSPRLSHA 761
           ++ A WLILPVVICLS RLSHA
Sbjct: 126 RRVAIWLILPVVICLSQRLSHA 147


>SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 17/22 (77%), Positives = 19/22 (86%)
 Frame = +3

Query: 696 KKRAPWLILPVVICLSPRLSHA 761
           ++ A WLILPVVICLS RLSHA
Sbjct: 102 RRVAIWLILPVVICLSQRLSHA 123


>SB_17017| Best HMM Match : TIL (HMM E-Value=4.8)
          Length = 171

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +3

Query: 696 KKRAPWLILPVVICLSPRLS 755
           ++ A WLILPVVICLS RLS
Sbjct: 147 RRVAIWLILPVVICLSQRLS 166


>SB_35070| Best HMM Match : TIL (HMM E-Value=8.6)
          Length = 147

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +3

Query: 696 KKRAPWLILPVVICLSPRLS 755
           ++ A WLILPVVICLS RLS
Sbjct: 123 RRVAIWLILPVVICLSQRLS 142


>SB_6589| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-36)
          Length = 651

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = -3

Query: 181 ATRKTNEHMKNFKISRTKKFMRPITKVSSSPQCIYVKLLTGQDIYERWIDTSD 23
           AT K+N+ ++  +   T +    + + +  PQC     + G+D+  +  DT D
Sbjct: 442 ATSKSNQGVRKAEEKGTHQIDVQVMESTDIPQCHATNAIAGEDVKAKKEDTED 494


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,696,385
Number of Sequences: 59808
Number of extensions: 362621
Number of successful extensions: 637
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)