Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20143
         (780 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    29   0.064
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   1.8  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   9.7  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 28.7 bits (61), Expect = 0.064
 Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
 Frame = +1

Query: 433 IWCFYLNIICF-NVNGLCEISVDRFCKLSFSLK--IKFSRIWIFIYLMILFI 579
           +W  +  + C  ++  LC ISVDRFC ++  LK  +K +   + +Y+ ++++
Sbjct: 116 LWVSFDVLSCTASILNLCMISVDRFCAITKPLKYGVKRTPRRMIVYVSLVWL 167


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 9   ACVMRSEVSIHLSYISCPVRSLTYIH 86
           AC+  S ++I + YISCP  S+ + H
Sbjct: 177 ACI--SILAIKVYYISCPEISVNFAH 200


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 433 IWCFYLNIICFNVNGLCEISVDRFCKLSFSLKIKFSRI 546
           IW    + +C   +G  E SV  FC  +   + KF ++
Sbjct: 68  IWQMERSCMCCQESGEREASVSLFCPRAKPGEKKFRKV 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,504
Number of Sequences: 438
Number of extensions: 4111
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)