Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20142
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    28   1.7  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    27   3.0  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    26   5.2  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   5.2  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    26   5.2  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    25   9.0  
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po...    25   9.0  

>SPCC1322.12c |bub1||serine/threonine protein kinase
            Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -1

Query: 517  INGS*RQLKTQNTSRYTSTQQSRHQTFD-LYPKAVFVRWDALTMTRLHIALRYTCDSYLI 341
            ING  RQ+ TQ   RY + Q   H+ FD L    + V  + L MT     +R   + +L+
Sbjct: 965  INGQRRQVLTQRMKRYWN-QDLWHRLFDLLLNPTLHVSEENLPMTEELSKIRIEMEEWLV 1023

Query: 340  D 338
            +
Sbjct: 1024 N 1024


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 409 RWDALTMTRLHIALRYTCDSYLIDRLL 329
           RW   T  RLH  LR+  +++L+D LL
Sbjct: 239 RWRQKTRERLHQKLRFQKNAFLLDVLL 265


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = -3

Query: 392 NDSVTYCITIYL*FVSDRSTSL----LINFLKLNRPSKSKPFSVEDTSI 258
           NDS+ +CI  +L ++   + SL    L+ F  +  P K K  S++D S+
Sbjct: 501 NDSLHHCIFPWLPYLEKHADSLLQSVLVQFSLILSPWKIKNGSIDDFSV 549


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
 Frame = +1

Query: 313  KKLINKEV---DLSDTNHKYIVMQYVTESLLM 399
            K+L NKE    +LSD + KYI +Q + E+LL+
Sbjct: 1131 KELENKEEKCQNLSDASLKYIELQEIHENLLL 1162


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 472 YTSTQQSRHQTFDLYPKA 419
           Y  +Q +RH  FD++PK+
Sbjct: 181 YAGSQLNRHSVFDIFPKS 198


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 6/19 (31%), Positives = 16/19 (84%)
 Frame = +1

Query: 211 VLNACSTKDWSSKIKQIDV 267
           +L+ CST++W S ++++++
Sbjct: 469 ILSTCSTEEWDSAMEELNI 487


>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 549 ILRLIDSLPNPAYFPDHTSSLEPP 620
           I+ L   LPNP YFP      E P
Sbjct: 38  IISLAGGLPNPEYFPIREMDAEIP 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,077,279
Number of Sequences: 5004
Number of extensions: 65063
Number of successful extensions: 197
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)