Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20142
         (769 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0334 + 24156532-24156565,24156681-24156782,24157145-241572...    29   4.1  
01_05_0174 + 18919759-18920265,18920381-18920443,18921060-189217...    28   9.4  

>05_05_0334 +
           24156532-24156565,24156681-24156782,24157145-24157274,
           24157361-24157445,24157525-24157666,24157762-24157894,
           24157993-24158254,24158331-24158519,24158596-24158721,
           24158809-24159195,24159288-24159398,24159629-24160423,
           24161114-24161255,24161350-24162518,24162609-24162818,
           24163010-24163478,24164037-24164464
          Length = 1637

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 22/84 (26%), Positives = 40/84 (47%)
 Frame = +3

Query: 495 NCLQLPFIWSSSLEPHPMILRLIDSLPNPAYFPDHTSSLEPPYTFLERVEELWNIAKTLY 674
           N  ++PFI     E  P +L+ +D+  N     +H+   +       ++  LW + +TL 
Sbjct: 356 NKFEIPFIAMYRKENCPSLLKDLDA--NEQTNEEHSDEEDQRKMMWHKM--LWAV-QTLD 410

Query: 675 NRWRLKEKKKVFTRMRLDQPLRNE 746
            +W L +K+KV   M  D+   +E
Sbjct: 411 KKWLLLQKRKVALEMYYDKRFDDE 434


>01_05_0174 +
           18919759-18920265,18920381-18920443,18921060-18921761,
           18922934-18923068,18923391-18923474,18924095-18924151,
           18924290-18924376,18924963-18925205
          Length = 625

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +1

Query: 640 LKNYGTLLKLYTTDGD*KKRRKYLRECVWTSP*ETKQS 753
           LKNY TL+K     GD + R ++L + V T P  +K+S
Sbjct: 365 LKNYATLVKYKAVTGD-QYRDRWLDKLVDTIPLTSKES 401


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,066,927
Number of Sequences: 37544
Number of extensions: 391162
Number of successful extensions: 936
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)