Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20141
         (742 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    23   2.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.5  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   6.0  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.9  

>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 587 HINKTKSGDSLENDYDIRYN 646
           ++NK K G  L N Y I YN
Sbjct: 109 YVNKAKFGKLLINLYTINYN 128


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 369 DQKAKHLATKVLRVYNDNYEAIRGKLESTLAPGD 470
           D+K K++  +V+RV   +YE    ++ S + P D
Sbjct: 336 DEK-KYILQEVVRVKKPHYELNMVEVRSPVTPAD 368


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/57 (21%), Positives = 22/57 (38%)
 Frame = +2

Query: 488 SNHCALRDPKPKIKAEISKPYTATGKPPLLPRKHINKTKSGDSLENDYDIRYNEAFP 658
           + HC +  P P ++++I  P      P        + T S     +D ++   E  P
Sbjct: 400 AKHCGVNVPVPPMQSQIINPQPQITSPS-NTNTSTSSTNSNKPNSSDLNMLIKETMP 455


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 328 GLRSPQPQRNRRH 366
           G R P P R+RRH
Sbjct: 328 GRRGPGPARSRRH 340


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -1

Query: 145 AW*WVQEWS 119
           AW WV +WS
Sbjct: 628 AWYWVMDWS 636


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,254
Number of Sequences: 336
Number of extensions: 3135
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)