Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20141
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    29   0.70 
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        28   1.2  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    28   1.2  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    27   2.8  
SPAC26A3.03c |rmi1||RecQ mediated genome instability protein Rmi...    26   4.9  
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    26   6.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   6.5  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   8.6  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    25   8.6  

>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +2

Query: 305 HNPSDQTEDFEAHNHNGTDDTRSKSQTPSHKGSESVQRQL 424
           H+P   TE+     H GT DT S     S    ES QRQL
Sbjct: 51  HSPQHSTEN---QGHTGTSDTSSLEMELSKLHPESKQRQL 87


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -3

Query: 719 KCI---SLRCHDKATRYLFRGKAGERPHYTECHSRSP 618
           KC+   ++RC+ K+  Y + G A    + TECH + P
Sbjct: 300 KCLQKETIRCNKKSNCYNWNGIAALETYTTECHIQIP 336


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = +3

Query: 474 IKPYLATTAPYEIPSRRLRPKYRSLTRP--QGNHRSFPENISIKQNLATPWRTTMTFGIM 647
           IKPY A T P  IPS    P+  S+  P    +   F  +    +   T  R+T      
Sbjct: 544 IKPYAAATPPKNIPSTYRAPQAPSVLSPVVTASEGDFELDGITPERQQTMTRSTYQESSQ 603

Query: 648 RPF 656
           RPF
Sbjct: 604 RPF 606


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 461 TGGLHKTVLSNHCALRD-PKPKIKAEISKPYTATGKPPLLPRKHINKTKSGDSLEN 625
           TG     VLS + ++ +  K   K E+SKP   +G     P + I+  K  D L+N
Sbjct: 472 TGASEIDVLSRYPSVEEIDKITDKIEVSKPLRNSGPLAFKPFEKISANKQTDLLQN 527


>SPAC26A3.03c |rmi1||RecQ mediated genome instability protein
           Rmi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 703 GVTTKPL-GICLEAKLGKGLIIPNVIV 626
           G+  KP+ GI L  KLG  L++ NV+V
Sbjct: 165 GLERKPIKGIQLSTKLGTKLLVKNVLV 191


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +2

Query: 290 QEKRNHNPSDQTEDFEAHNHNGTDDTRSKSQTPSHKG 400
           +E  N N S+Q E       NG D+TRS     S KG
Sbjct: 415 EETSNGNKSEQEE-----KENGNDETRSNDSLVSGKG 446


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 381 KHLATKVLRVYNDNYEAIRGKLESTLAPGDYIKPYLATTAPYEIPS 518
           + +A   L+V  D ++  +  +EST  P   +   L+T  PY IPS
Sbjct: 112 EEVAVFCLKVIMDIFKTFKFCIESTAQPFFDLVLELSTNLPYLIPS 157


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 314 SDQTEDF-EAHNHNGTDDTRSKSQTPSHKGSESVQRQ 421
           +DQTE+F E  ++NG+  ++  S    H G ES+  Q
Sbjct: 632 TDQTEEFTERRDNNGSIPSKQPSD-EQHLGKESLPSQ 667


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 683 EWLCRDTGERYTFPGSETYQ 742
           E+L  +  +R+T+PGS+ YQ
Sbjct: 352 EFLSDENHDRWTYPGSQFYQ 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,603,132
Number of Sequences: 5004
Number of extensions: 51983
Number of successful extensions: 149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)