Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20141
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0496 + 18079905-18081586,18084825-18084868,18086396-180865...    31   0.73 
11_06_0173 + 20891526-20891957                                         30   2.2  
03_05_0674 + 26619579-26619658,26620020-26620746,26620999-266214...    29   2.9  
11_03_0050 - 9323946-9324143,9324161-9324163                           28   9.0  
01_06_1836 + 40228508-40230448                                         28   9.0  

>09_04_0496 + 18079905-18081586,18084825-18084868,18086396-18086502,
            18087069-18087674,18087789-18088013,18088102-18088167,
            18088268-18088336,18088511-18088582,18088672-18088848,
            18089978-18090115
          Length = 1061

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 23/83 (27%), Positives = 36/83 (43%)
 Frame = +2

Query: 314  SDQTEDFEAHNHNGTDDTRSKSQTPSHKGSESVQRQLRSH*RQIRVDIGTGGLHKTVLSN 493
            +D+ E+F  + H+    +       S KGS+S +R      R+    +GT  +H + L +
Sbjct: 774  NDKAEEFAGNGHDEVPSSEVAGGDCSSKGSDSKKR------RRPNEVMGTDQVHSSNLPS 827

Query: 494  HCALRDPKPKIKAEISKPYTATG 562
              A      K K E S P T  G
Sbjct: 828  DSANESVHSKDKGEESSPATTNG 850


>11_06_0173 + 20891526-20891957
          Length = 143

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -1

Query: 721 KSVSLSGVTTKPLGICLEAKLGKGLIIPNVIVVLQG 614
           +S S+S     PLG CL AK  KG +I N+  V+ G
Sbjct: 24  ESSSVSSSLESPLGGCLRAKGAKGRVIFNLAKVVVG 59


>03_05_0674 +
           26619579-26619658,26620020-26620746,26620999-26621486,
           26621746-26621902,26621975-26621998
          Length = 491

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 506 RDPKPKIKAEISKPYTATGKPPLLPRKHINKTKSG 610
           R P P  ++  S+P+   G+P LL R H+N  + G
Sbjct: 296 RPPTPSPRSSFSRPHRRQGRPQLLLR-HLNPQRHG 329


>11_03_0050 - 9323946-9324143,9324161-9324163
          Length = 66

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 302 NHNPSDQTEDFEAHNHNGTDDTRSKSQTPSHKGS 403
           N NP  + EDF+ +++   D+T  K      +GS
Sbjct: 33  NENPLSEEEDFDDNDNMSGDNTGDKDDNNERRGS 66


>01_06_1836 + 40228508-40230448
          Length = 646

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 1   RHELPRGLQPVAGRDLTAPL 60
           RH L RG+ P+AG DL A L
Sbjct: 143 RHLLARGMSPLAGEDLHASL 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,604,246
Number of Sequences: 37544
Number of extensions: 364710
Number of successful extensions: 1081
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)