Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20141
         (742 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21131| Best HMM Match : MttA_Hcf106 (HMM E-Value=5e-14)             31   1.3  
SB_55861| Best HMM Match : Transposase_27 (HMM E-Value=0)              29   5.2  
SB_40981| Best HMM Match : Kringle (HMM E-Value=7.2)                   29   5.2  
SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)                29   5.2  
SB_7781| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.1  
SB_12332| Best HMM Match : PI-PLC-X (HMM E-Value=0)                    28   9.1  

>SB_21131| Best HMM Match : MttA_Hcf106 (HMM E-Value=5e-14)
          Length = 244

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +3

Query: 396 KVLRVYNDNYEAIRGKLESTLAPGDYIKPYLATTAPYEIPS 518
           K +R +ND  + ++ ++E+ LA    I+PYLAT     IPS
Sbjct: 39  KGIREFNDAKKGVKDEIEAVLAS---IQPYLATAQDNAIPS 76


>SB_55861| Best HMM Match : Transposase_27 (HMM E-Value=0)
          Length = 125

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 21/82 (25%), Positives = 42/82 (51%)
 Frame = +3

Query: 393 TKVLRVYNDNYEAIRGKLESTLAPGDYIKPYLATTAPYEIPSRRLRPKYRSLTRPQGNHR 572
           T V  V+ +   A  G+L S L+P D +   +  T  + +   RL+ K   +++ +   R
Sbjct: 27  TVVAHVFGERTMATLGRLMSLLSPFDVV---IWMTDGWPLYESRLKGKLHVISK-RYTQR 82

Query: 573 SFPENISIKQNLATPWRTTMTF 638
               N++++Q+LA   R +++F
Sbjct: 83  IERHNLNLRQHLARLGRKSLSF 104


>SB_40981| Best HMM Match : Kringle (HMM E-Value=7.2)
          Length = 133

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 290 QEKRNHNPSDQTEDFEAHNHNGTDDTRSKSQTPSHKGSESVQRQLRSH 433
           QE       D+T  F+ HN  GT D   + Q  + +G+E    Q + H
Sbjct: 49  QEHNLRGTVDKTIQFQEHNLRGTVDKTIQFQEHNLRGTEDKTIQFQEH 96


>SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
          Length = 617

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 660 SFASKQIPSGFVVTPERDTLFPVQK 734
           +F   ++PS FV+TPER  LF ++K
Sbjct: 280 NFDGFKVPSLFVITPERRVLFGLKK 304


>SB_7781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 447

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +3

Query: 453 TLAPGDYIKPYLATTAPYEIP---SRRLRPKYRSLTRPQGNHRS 575
           TL   ++  PY+ +T+P  +P   + R++P +   T    NHRS
Sbjct: 25  TLYASNHRSPYILSTSPTTVPLIYTLRVQPPFPLYTLYASNHRS 68


>SB_12332| Best HMM Match : PI-PLC-X (HMM E-Value=0)
          Length = 1038

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 515 KPKIKAEISKPYTATGKPPLLP 580
           KP ++ ++S PY  TG+ P LP
Sbjct: 735 KPPLQHQMSSPYPITGRTPSLP 756


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,082,432
Number of Sequences: 59808
Number of extensions: 422059
Number of successful extensions: 1320
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)