Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20141
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical ...    33   0.28 
U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n...    30   2.0  
Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL132948-34|CAD31836.1|  248|Caenorhabditis elegans Hypothetical...    29   2.6  
Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AF078788-2|AAC26964.1|  311|Caenorhabditis elegans Hypothetical ...    29   4.6  
U46753-6|AAO21474.1|  740|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U46753-5|ABB88235.1|  803|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U46753-4|AAO21475.1|  764|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U53338-7|AAA96195.2|  342|Caenorhabditis elegans Lunapark (membr...    28   8.0  

>AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical
           protein Y46G5A.6 protein.
          Length = 1002

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 27/105 (25%), Positives = 43/105 (40%)
 Frame = +2

Query: 314 SDQTEDFEAHNHNGTDDTRSKSQTPSHKGSESVQRQLRSH*RQIRVDIGTGGLHKTVLSN 493
           SD+ +  E  + +  DD R   +TP      SV+RQ +   R+ R+        +     
Sbjct: 594 SDEVKKEEPESSD-EDDNRKDQRTPREDRRRSVERQDQREDRKERIKSPDDRAERRRSPE 652

Query: 494 HCALRDPKPKIKAEISKPYTATGKPPLLPRKHINKTKSGDSLEND 628
            C  R   P+ + E   P     K PL   +   + +  DSLEN+
Sbjct: 653 DCRDRLRSPEDRTERRSPSVERRKSPL---RRDERRRRHDSLENE 694


>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 15
           protein.
          Length = 1217

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 528 RPKYRSLTRPQGNHRSFPENISIKQNLATP 617
           +P+  ++  PQ  H+  P N++++QNL  P
Sbjct: 535 QPQQPNMNSPQSQHQRAPNNMNMQQNLPNP 564


>Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical
           protein F40F8.5 protein.
          Length = 420

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +2

Query: 290 QEKRNHN--PSDQTEDFEAHNH--NGTDDTRSKSQTPSHKGSESVQRQLRSH 433
           + KRNH+  PSD T D   HNH    +DD         H G  +  R+ R+H
Sbjct: 208 RRKRNHDDDPSDTTIDHTGHNHRRRRSDDHDPNDPNVDHIG-HNHHRRKRNH 258


>AL132948-34|CAD31836.1|  248|Caenorhabditis elegans Hypothetical
           protein Y39B6A.46 protein.
          Length = 248

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 467 GLHKTVLSNHCALRDPKPKIKAEISKPYTATGKPPLLPRKHI 592
           GL++   +   A R P+ KI+ +I  P     KPP +P+K I
Sbjct: 126 GLYRHGKTAEHATRPPRRKIERKIQIPAEPPEKPPEIPKKSI 167


>Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical protein
            C05C9.3 protein.
          Length = 1225

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +2

Query: 290  QEKRNHNPSDQTEDFEAHN--HNGTDDTRSKSQTPSHKGSESVQRQLRSH 433
            ++++NHNP  Q E F+ H   +      + + +     G   +Q QL  H
Sbjct: 1047 EQRQNHNPMHQIEHFQQHQLVNKVRPHYQQQGEMKRQDGMHQMQNQLHHH 1096


>U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical protein
            M02E1.1a protein.
          Length = 1077

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/67 (25%), Positives = 30/67 (44%)
 Frame = +3

Query: 531  PKYRSLTRPQGNHRSFPENISIKQNLATPWRTTMTFGIMRPFPSFASKQIPSGFVVTPER 710
            P+ R    P  NH++  + +  + N+    +  M F    PFPSF++  +P+   + P  
Sbjct: 1004 PQLRPNEVPMLNHQNITQQLLAQFNIR---QNNMQFSTPAPFPSFSNNPMPACPSMIPSF 1060

Query: 711  DTLFPVQ 731
                P Q
Sbjct: 1061 PVFSPDQ 1067


>AF078788-2|AAC26964.1|  311|Caenorhabditis elegans Hypothetical
           protein ZC190.5 protein.
          Length = 311

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 399 PLWLGVWLFDLVSSVPLWLW-ASKSSVWSLGL 307
           P   G  +F ++S +P+W+W  S  + W  GL
Sbjct: 173 PAVAGASIFKVLSMIPIWIWLLSNLTDWEYGL 204


>U46753-6|AAO21474.1|  740|Caenorhabditis elegans Hypothetical
           protein C34F11.3a protein.
          Length = 740

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/64 (26%), Positives = 26/64 (40%)
 Frame = +2

Query: 476 KTVLSNHCALRDPKPKIKAEISKPYTATGKPPLLPRKHINKTKSGDSLENDYDIRYNEAF 655
           +  LS H     PK ++K   +   T+   PP  P+ H  K       E  Y +R N   
Sbjct: 150 RNFLSGHYPANLPKHRVKNTETTVQTSFN-PPDPPKDHWGKNDPLPKYEKIYHLRRNRGV 208

Query: 656 PQLC 667
            ++C
Sbjct: 209 TEIC 212


>U46753-5|ABB88235.1|  803|Caenorhabditis elegans Hypothetical
           protein C34F11.3c protein.
          Length = 803

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/64 (26%), Positives = 26/64 (40%)
 Frame = +2

Query: 476 KTVLSNHCALRDPKPKIKAEISKPYTATGKPPLLPRKHINKTKSGDSLENDYDIRYNEAF 655
           +  LS H     PK ++K   +   T+   PP  P+ H  K       E  Y +R N   
Sbjct: 213 RNFLSGHYPANLPKHRVKNTETTVQTSFN-PPDPPKDHWGKNDPLPKYEKIYHLRRNRGV 271

Query: 656 PQLC 667
            ++C
Sbjct: 272 TEIC 275


>U46753-4|AAO21475.1|  764|Caenorhabditis elegans Hypothetical
           protein C34F11.3b protein.
          Length = 764

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/64 (26%), Positives = 26/64 (40%)
 Frame = +2

Query: 476 KTVLSNHCALRDPKPKIKAEISKPYTATGKPPLLPRKHINKTKSGDSLENDYDIRYNEAF 655
           +  LS H     PK ++K   +   T+   PP  P+ H  K       E  Y +R N   
Sbjct: 174 RNFLSGHYPANLPKHRVKNTETTVQTSFN-PPDPPKDHWGKNDPLPKYEKIYHLRRNRGV 232

Query: 656 PQLC 667
            ++C
Sbjct: 233 TEIC 236


>U53338-7|AAA96195.2|  342|Caenorhabditis elegans Lunapark (membrane
           protein) homologprotein 1 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 311 PSDQTEDFEAHNHNGTDDTRSKSQTPSHKGSES 409
           PS+ T +   +    TD T S SQ  S KGS+S
Sbjct: 294 PSENTHNMMENQKPSTDLTPSASQNGSEKGSDS 326


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,468,618
Number of Sequences: 27780
Number of extensions: 300418
Number of successful extensions: 861
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)