Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20141
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   4.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   4.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   4.0  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   7.0  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   9.2  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 554 ATGKPPLLPRKHINKTKSGDSLEND 628
           A   PP+LP  H+   K  D +E +
Sbjct: 354 AVPAPPVLPENHLKNAKYLDVIERN 378


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 554 ATGKPPLLPRKHINKTKSGDSLEND 628
           A   PP+LP  H+   K  D +E +
Sbjct: 354 AVPAPPVLPENHLKNAKYLDVIERN 378


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 554 ATGKPPLLPRKHINKTKSGDSLEND 628
           A   PP+LP  H+   K  D +E +
Sbjct: 354 AVPAPPVLPENHLKNAKYLDVIERN 378


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = -2

Query: 432 WLRNCRCTLSEPLWLGVWLFDLVSSVPLWLWASKSSVWSLGLWFL 298
           W + C    +  + +GV+ F+++  VP+     +   WS  L +L
Sbjct: 490 WWKICWTITTPAICVGVFTFNIIKFVPVKYLTYEYPWWSHVLGWL 534


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = -2

Query: 432 WLRNCRCTLSEPLWLGVWLFDLVSSVPLWLWASKSSVWSLGLWFL 298
           W + C    +  + +GV+ F+++  VP+     +   WS  L +L
Sbjct: 543 WWKICWTITTPAICVGVFTFNIIKFVPVKYLTYEYPWWSHVLGWL 587


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 495 WLLSTVLCNPPV 460
           W+LS V+C PP+
Sbjct: 190 WILSFVICFPPL 201


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 56  GAVRSLPATGCNPRGSS 6
           GA+ S P  GC PR ++
Sbjct: 168 GAITSPPLLGCFPRATN 184


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 579 PENISIKQNLATPWRTTM 632
           P+N+ IK+ + TP R T+
Sbjct: 229 PDNVLIKELVVTPNRETI 246


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,838
Number of Sequences: 438
Number of extensions: 3725
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)