Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20141
         (742 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10760.1 68416.m01295 myb family transcription factor contain...    28   5.7  
At4g09850.1 68417.m01614 expressed protein  ; expression support...    28   7.5  
At1g74830.1 68414.m08670 expressed protein contains Pfam profile...    28   7.5  
At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein ...    27   9.9  
At1g31250.1 68414.m03825 proline-rich family protein contains pr...    27   9.9  

>At3g10760.1 68416.m01295 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 335

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +2

Query: 302 NHNPSDQTEDFEAHNHNGTDDTRSKSQTPSHKGSESVQRQLRSH*RQIRVDIGTGG 469
           NH   +  +    H+H  T  T S+ Q PS + + S +    S       D+G+GG
Sbjct: 44  NHGNGNSNQPHHHHHHQTTPPTPSQLQLPSSQANSSAEFAADS------ADLGSGG 93


>At4g09850.1 68417.m01614 expressed protein  ; expression supported
           by MPSS
          Length = 71

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 525 LRPKYRSLTRPQGNHR 572
           + PKYR  TRP G+HR
Sbjct: 1   MSPKYRLYTRPSGHHR 16


>At1g74830.1 68414.m08670 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593
          Length = 542

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
 Frame = +2

Query: 449 VDIGTGGLHKTVLSNHCALRDPKPKIKAE-ISKPYTATGKPPLLPRKHINKTKSGDSLEN 625
           VD  T  +    L  HC+      KIK+E + K   +   P   PR   NK    +S   
Sbjct: 183 VDYKTNNIKNDSLKQHCSCCGELLKIKSEKLPKNNNSFLAPAPSPRVSHNKLSENESEFK 242

Query: 626 DYDIRYNEAF 655
           D D+    +F
Sbjct: 243 DMDVDRTPSF 252


>At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 437

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +2

Query: 446 RVDIGTGGLHKTVLSNHCALRDPKPKIKAEISKPYTATGKP 568
           R  IGT    K +LS   A R+     ++E   P  A G P
Sbjct: 359 RFSIGTSATDKVILSTSMAAREFDDVAESEEENPEAANGSP 399


>At1g31250.1 68414.m03825 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965;
           similar to prolin rich protein GB:S44189 GI:433706 from
           [Zea mays]
          Length = 165

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 480 PYLATTAPYEIPSRRLRPKYRS-LTRPQGNHRSFPENISIKQNLATP 617
           P +  T PY  PS +L P Y S   RP G   +   ++ +    A+P
Sbjct: 59  PSVKLTPPYASPSVKLTPPYASPSVRPAGTTPNASPSVKLTPPYASP 105


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,967,425
Number of Sequences: 28952
Number of extensions: 287796
Number of successful extensions: 833
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)