Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20139
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    29   0.54 
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p...    26   6.7  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    25   8.9  

>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +3

Query: 15  NKEGKIPHASKNTSLYHENQTLNIRRKL 98
           NKEG +P ASKNT++ H   +++ RR L
Sbjct: 70  NKEG-VPLASKNTNVRHTTASVSTRRAL 96


>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -1

Query: 239 VGRRAY-GPPVGEWLPLPMDFSN-AWGRTVNYSIN 141
           V R  Y G  V  W P P+D SN AW   +   +N
Sbjct: 71  VDRSKYIGATVSGWAPGPLDGSNAAWREYITLDVN 105


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +1

Query: 160 VLPQALLKSMGNGNHSPTGGPYARLPTRAIRKKSLDNTTTLTYSISRNLYRPS 318
           VLP+ +  S+     +    P A LPT    KK      +++++I++N  +P+
Sbjct: 561 VLPEGMAASLKKRTTNTAATPQAALPTTLDTKKD----RSVSFNINKNAEKPT 609


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,078,714
Number of Sequences: 5004
Number of extensions: 61806
Number of successful extensions: 150
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)