Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20139
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0251 - 15849211-15851457                                         30   1.7  
10_08_0890 + 21339976-21340198,21340293-21340402,21340652-213408...    30   2.3  
06_03_0176 - 17575155-17575761,17575935-17575972                       29   3.0  
10_08_0719 + 20097639-20097968,20098048-20098410                       29   4.0  
11_04_0053 - 12881524-12881592,12882481-12882546,12882647-128828...    28   7.0  
02_05_0637 + 30543158-30543895                                         28   9.3  

>03_03_0251 - 15849211-15851457
          Length = 748

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 282 QGGSIVQALFPYCPRRQTGVRPTCW*VVTVAHGLQQC 172
           QGG +  A+  +C  R +GV P    ++++A  + QC
Sbjct: 248 QGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQC 284


>10_08_0890 +
           21339976-21340198,21340293-21340402,21340652-21340836,
           21341415-21341757
          Length = 286

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 233 RRAYGPPVGEWLPLPMDFSNAWGRTVNYSI 144
           + A+GPP G W P+   + + W    N+ +
Sbjct: 218 KTAHGPPTGRWTPMRESWGSIWRLDTNHRL 247


>06_03_0176 - 17575155-17575761,17575935-17575972
          Length = 214

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 554 RGPTCSWWS*RLATMSRLHELTT 622
           RGP   WWS R AT SR  + T+
Sbjct: 89  RGPATRWWSSRRATTSRRQDYTS 111


>10_08_0719 + 20097639-20097968,20098048-20098410
          Length = 230

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +3

Query: 171 GIAEVHGQR*PLTNRWAVRPSAYEGNKEKEP 263
           G+A + G R PL   WA R SA E  KE  P
Sbjct: 178 GVAFLDGARTPLLAAWAARFSALEAAKEAIP 208


>11_04_0053 -
           12881524-12881592,12882481-12882546,12882647-12882808,
           12883123-12883266,12883975-12884145,12884265-12884333,
           12884899-12885054,12887398-12887673
          Length = 370

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +3

Query: 639 AIVSLTFAHSL*XSTASINPSSDSSGAPL*RALHERV 749
           AI+ L+ +HSL   T++++ +S   G P+ R LH RV
Sbjct: 2   AILPLSISHSL---TSALSATSSGIGRPVARLLHPRV 35


>02_05_0637 + 30543158-30543895
          Length = 245

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 263 RLFFLIALVGRRAYGPPVGEW 201
           RL+FL+AL  R A GPP   W
Sbjct: 68  RLYFLVALPRRPAAGPPRRAW 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,950,136
Number of Sequences: 37544
Number of extensions: 431293
Number of successful extensions: 1051
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)